Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41772

Metabolite ID
P41772
Deionized mass
446.6674 Da
Average m/z
447.6741
Average RT
20.9348
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)5.724e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.379e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)5.673e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)8.723e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.723e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)9.727e-12
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)6.456e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.436e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.854e-13
Glyma.03G036500 WNK5 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr03:4402746–4408323 (+)4.311e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.775e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.493e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.403e-13
Glyma.06G133700 Pyridoxal reductase, chloroplastic AT5G53580:PLR1:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:10995438–10999422 (-)9.474e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.385e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.649e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.65e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.378e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.378e-11
Glyma.06G307900 hypothetical protein NA 1Chr06:49664901–49674729 (+)3.579e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.83e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)9.217e-12
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)9.103e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.723e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.723e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)2.274e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.723e-12
Glyma.08G150700 hypothetical protein AT2G44500:AT2G44500:O-fucosyltransferase family protein 1Chr08:11603469–11607610 (+)5.207e-11
Glyma.09G038600 hypothetical protein AT5G49360:BXL1:beta-xylosidase 1 1Chr09:3236472–3243191 (+)1.283e-11
Glyma.09G038700 hypothetical protein NA 1Chr09:3245046–3247956 (+)1.283e-11
Glyma.09G038800 hypothetical protein NA 1Chr09:3251349–3254283 (+)2.978e-12
Glyma.09G038900 hypothetical protein NA 1Chr09:3263227–3268153 (+)1.283e-11
Glyma.09G039000 hypothetical protein NA 1Chr09:3270971–3276530 (-)9.231e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.232e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)4.866e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)4.866e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)4.866e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)4.866e-12
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)1.428e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)2.741e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.361e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.361e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.191e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)4.148e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)4.148e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.867e-13
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)6.476e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)5.055e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)2.79e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)8.695e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.013e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.569e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.569e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)5.673e-12
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)8.272e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)3.768e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)2.205e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.959e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.958e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.857e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.804e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.352e-13
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)8.062e-11
Glyma.20G107600 hypothetical protein NA 1Chr20:35025241–35029762 (+)5.24e-13
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)3.827e-15
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)7.172e-16
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.932e-12
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)1.359e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)4.201e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.338e-18
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)1.739e-16
Glyma.20G110900 hypothetical protein NA 1Chr20:35311096–35312894 (-)3.512e-12