Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41640

Metabolite ID
P41640
Deionized mass
905.4795 Da
Average m/z
906.4888
Average RT
20.8950
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 8Chr16:36856833–36863994 (-)1.061e-18
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)5.89e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 3Chr16:36806718–36809299 (+)4.597e-18
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 3Chr16:36871978–36878151 (-)9.539e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)5.046e-14
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)3.946e-16
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 2Chr16:36739878–36743378 (-)1.56e-13
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 2Chr16:36776806–36778169 (+)1.95e-13
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)7.217e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.101e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)3.123e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)5.381e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.397e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.055e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.363e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)5.351e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.896e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.612e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.574e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)5.89e-13
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)5.89e-13
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.479e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.479e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.928e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.928e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.928e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.928e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.821e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.83e-13
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.122e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.122e-12
Glyma.16G207600 hypothetical protein AT5G23550:AT5G23550:Got1/Sft2-like vescicle transport protein family 1Chr16:36733685–36738992 (+)2.496e-12
Glyma.16G207800 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36750028–36751833 (-)3.265e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)6.094e-14
Glyma.16G208300 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36786114–36787686 (+)2.202e-11
Glyma.16G208700 hypothetical protein AT5G26360:AT5G26360:TCP-1/cpn60 chaperonin family protein 1Chr16:36814752–36820289 (-)3.823e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)8.823e-14
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)5.046e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.946e-16
Glyma.19G000900 hypothetical protein NA 1Chr19:69366–73143 (+)2.667e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)2.275e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.251e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)8.617e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)6.514e-11