Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41601

Metabolite ID
P41601
Deionized mass
938.4587 Da
Average m/z
939.4633
Average RT
20.8698
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
80
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

80 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)4.206e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)1.4e-15
Glyma.03G021000 hypothetical protein NA 2Chr03:2148298–2162954 (-)5.733e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.751e-14
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)6.588e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)4.366e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)7.647e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.575e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)7.459e-11
Glyma.03G020900 hypothetical protein AT3G18030:HAL3A:HAL3-like protein A 1Chr03:2143987–2147131 (-)5.733e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)8.242e-11
Glyma.03G022400 hypothetical protein NA 1Chr03:2334661–2335316 (+)8.747e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.537e-15
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)2.036e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.184e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)6.641e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.433e-15
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.24e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.297e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.974e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.974e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.974e-11
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)4.131e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.971e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.831e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.36e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.992e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.992e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.573e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)2.068e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.044e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)8.538e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.044e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.044e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)8.537e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)5.426e-12
Glyma.08G182500 hypothetical protein NA 1Chr08:14639429–14643788 (+)6.832e-11
Glyma.08G183500 SWEET24 sugar efflux transporter SWEET24 AT5G13170:SAG29:senescence-associated 29 1Chr08:14724384–14726579 (+)3.14e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)9.318e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.68e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.606e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.434e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.577e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)7.094e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.531e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.531e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.589e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)7.589e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)7.589e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)4.718e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.106e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.751e-14
Glyma.14G149700 hypothetical protein AT1G77590:LACS9:long chain acyl-CoA synthetase 9 1Chr14:32271989–32301104 (+)5.173e-12
Glyma.14G149900 hypothetical protein NA 1Chr14:32305914–32312520 (-)1.03e-11
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)1.824e-12
Glyma.14G150300 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr14:32471354–32474446 (-)1.997e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.898e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.898e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)3.221e-16
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)3.221e-16
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.077e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.622e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.077e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.077e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.134e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.054e-15
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)3.509e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.152e-12
Glyma.16G158300 hypothetical protein AT5G43140:AT5G43140:Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 1Chr16:31859405–31862567 (+)5.826e-11
Glyma.16G158400 hypothetical protein AT5G48100:TT10:Laccase/Diphenol oxidase family protein 1Chr16:31863760–31867327 (-)5.826e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.177e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.382e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.959e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)6.588e-11
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)5.222e-14
Glyma.18G273000 hypothetical protein NA 1Chr18:55575628–55582063 (-)1.953e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.325e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)5.365e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.202e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.202e-11