Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41535

Metabolite ID
P41535
Deionized mass
587.2692 Da
Average m/z
588.2763
Average RT
20.8142
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G010200 hypothetical protein AT1G32060:PRK:phosphoribulokinase 1Chr01:993024–997480 (-)3.369e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.804e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.522e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.522e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)8.105e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.933e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.03e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.925e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)1.697e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)2.552e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.354e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.354e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.355e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.562e-17
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)7.459e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.924e-11
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)5.739e-13
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)2.958e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.304e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.304e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.023e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.023e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.257e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.257e-13
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.019e-12
Glyma.13G238400 hypothetical protein AT3G46930:AT3G46930:Protein kinase superfamily protein__AT5G58950:AT5G58950:Protein kinase superfamily protein 1Chr13:34872388–34881743 (-)6.51e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.793e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.435e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)4.663e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)4.663e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.74e-12
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)2.355e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.388e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.388e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.282e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.726e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.282e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.282e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.898e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.164e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)5.595e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)5.595e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.453e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.448e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.938e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)4.084e-12
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)2.817e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.489e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.489e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.693e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)2.749e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)9.576e-11
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)1.104e-11
Glyma.19G005900 Phosphoenolpyruvate/phosphate translocator 2, chloroplastic AT3G01550:PPT2:phosphoenolpyruvate (pep)/phosphate translocator 2 1Chr19:537642–545561 (+)7.853e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)1.275e-13
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)7.467e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.675e-13