Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41468

Metabolite ID
P41468
Deionized mass
506.2246 Da
Average m/z
507.2289
Average RT
20.7801
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)2.039e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.076e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.454e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)2.678e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.641e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.641e-12
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)7.246e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.594e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.466e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)4.809e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.188e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.605e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.901e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)3.754e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.359e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.359e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)9.877e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)9.062e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.315e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.93e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)9.657e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.928e-11
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)7.027e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.454e-15
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)6.322e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.454e-13
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.273e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.381e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.57e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.381e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.381e-15
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.616e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.127e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)3.364e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)7.493e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)4.317e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)4.317e-12
Glyma.16G055000 hypothetical protein NA 1Chr16:5411241–5413143 (-)5.712e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.874e-11
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)5.09e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.508e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.243e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.469e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.534e-13
Glyma.17G099300 hypothetical protein AT3G47610:AT3G47610:transcription regulator/ zinc ion binding protein 1Chr17:7838198–7840795 (-)2.053e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)4.578e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)3.261e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.279e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.279e-16
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)1.885e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)8.421e-15
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.771e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.012e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.105e-15
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)1.954e-12