Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41286

Metabolite ID
P41286
Deionized mass
369.2541 Da
Average m/z
370.2637
Average RT
20.6810
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
97
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

97 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.617e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)6.617e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)4.02e-12
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr06:10709045–10716245 (-)5.518e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.228e-13
Glyma.10G038400 hypothetical protein NA 2Chr10:3400759–3409406 (+)2.574e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)8.376e-13
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)2.04e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)3.555e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.617e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.548e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.548e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.18e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.053e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.116e-12
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)7.378e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.289e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.213e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.041e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.041e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.261e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.39e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.39e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.39e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.803e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.632e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.562e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.562e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.562e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.587e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.587e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)4.583e-11
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)8.649e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)2.45e-12
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)2.45e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.406e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)7.044e-14
Glyma.06G133700 Pyridoxal reductase, chloroplastic AT5G53580:PLR1:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:10995438–10999422 (-)3.126e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)5.38e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)1.784e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.086e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)3.152e-13
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)3.152e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.228e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.228e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.228e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.228e-13
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.299e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.085e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)7.261e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)7.261e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)6.028e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)9.02e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.912e-11
Glyma.10G038200 hypothetical protein NA 1Chr10:3394443–3395342 (-)5.172e-11
Glyma.10G038600 hypothetical protein AT4G28540:CKL6:casein kinase I-like 6 1Chr10:3423991–3432355 (+)9.376e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)9.255e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)7.249e-12
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)5.09e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.971e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.971e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.077e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.077e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)6.153e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.377e-13
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.1e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.742e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.974e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.503e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.241e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.316e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)4.123e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.313e-14
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.522e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.209e-12
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)9.285e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)9.285e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)3.987e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.832e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.432e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.432e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.831e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.831e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.264e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.982e-12
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)2.565e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.74e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.74e-15
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)4.112e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.306e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.42e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.108e-14
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.887e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)7.22e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)3.932e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.572e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)4.323e-12