Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41279

Metabolite ID
P41279
Deionized mass
417.2051 Da
Average m/z
418.2095
Average RT
20.6786
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.225e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)9.044e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.748e-15
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.739e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.739e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)8.14e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)7.044e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)5.861e-14
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)9.152e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 2Chr18:57674222–57678396 (+)3.345e-12
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)7.664e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)1.707e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.024e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)4.783e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.247e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.105e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.156e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.948e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.948e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.948e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)8.322e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.64e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.64e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.43e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.589e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.43e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.43e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.589e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.93e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.703e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.685e-13
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)1.632e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.818e-12
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.794e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.907e-11
Glyma.11G019200 hypothetical protein AT4G23730:AT4G23730:Galactose mutarotase-like superfamily protein 1Chr11:1353056–1355103 (-)3.017e-11
Glyma.12G096000 hypothetical protein AT1G08465:YAB2:Plant-specific transcription factor YABBY family protein 1Chr12:8080306–8088711 (-)6.587e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.74e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.74e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.813e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.813e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.192e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.748e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)6.942e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.199e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.225e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)8.501e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.256e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.256e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.739e-14
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.271e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.211e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.117e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.117e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)9.501e-12
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)5.452e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.561e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.561e-11