Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41272

Metabolite ID
P41272
Deionized mass
564.2928 Da
Average m/z
565.2964
Average RT
20.6700
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.465e-11
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)8.78e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.367e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.367e-12
Glyma.16G137600 hypothetical protein NA 2Chr16:29468438–29472890 (-)3.188e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)7.66e-14
Glyma.16G189500 hypothetical protein NA 2Chr16:35202920–35206459 (-)6.381e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)3.022e-13
Glyma.18G201700 hypothetical protein NA 2Chr18:48175554–48180264 (+)2.097e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.465e-11
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)2.095e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.297e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.297e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.758e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.19e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.856e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.785e-11
Glyma.06G147600 BRI1A brassinosteroid receptor AT4G39400:BRI1:Leucine-rich receptor-like protein kinase family protein 1Chr06:12052122–12056526 (-)9.421e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.592e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.829e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.829e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)3.165e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)4.121e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)2.095e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)2.095e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.387e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.387e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.367e-12
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)1.812e-13
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)8.813e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)2.22e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.534e-12
Glyma.14G114900 hypothetical protein AT4G15850:RH1:RNA helicase 1 1Chr14:13635763–13649892 (+)6.467e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.742e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.368e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.385e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.042e-12
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)8.454e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.974e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.45e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.45e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)7.66e-14
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.187e-11
Glyma.16G189400 hypothetical protein NA 1Chr16:35199461–35202266 (+)6.381e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)2.628e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)3.022e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)9.57e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.518e-11
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)6.639e-11