Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41090

Metabolite ID
P41090
Deionized mass
508.2649 Da
Average m/z
509.2720
Average RT
20.5529
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
82
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

82 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.94e-15
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.29e-11
Glyma.19G037200 hypothetical protein AT5G15680:AT5G15680:ARM repeat superfamily protein 3Chr19:5178930–5212367 (+)9.285e-11
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)8.804e-11
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)5.106e-15
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)5.426e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)5.426e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)5.426e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.563e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.564e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.504e-11
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)8.239e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)7.759e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.94e-15
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)8.804e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.91e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.52e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)5.492e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)1.96e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.492e-11
Glyma.06G046700 hypothetical protein NA 1Chr06:3528430–3530718 (-)9.835e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.29e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.29e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.506e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.506e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.235e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.415e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.016e-11
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)7.138e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.603e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.222e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)5.426e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)5.426e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)5.426e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)5.426e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)5.426e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.063e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.063e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.063e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.063e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.706e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.446e-12
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)4.937e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.709e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.396e-13
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)4.498e-12
Glyma.11G126100 hypothetical protein AT1G08450:CRT3:calreticulin 3 1Chr11:9581659–9588340 (+)1.467e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.236e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.236e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.236e-12
Glyma.11G184400 hypothetical protein NA 1Chr11:25256684–25259757 (+)3.926e-11
Glyma.11G184600 hypothetical protein AT4G08960:AT4G08960:phosphotyrosyl phosphatase activator (PTPA) family protein 1Chr11:25265163–25267323 (-)2.216e-11
Glyma.11G184900 hypothetical protein AT3G44530:HIRA:histone chaperone HIRA-like protein 1Chr11:25289268–25298978 (+)2.216e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.557e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.557e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.563e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.222e-15
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)3.798e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.978e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.998e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.504e-11
Glyma.14G205100 hypothetical protein NA 1Chr14:47020646–47026852 (+)5.276e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.004e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.506e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.145e-11
Glyma.16G020900 hypothetical protein NA 1Chr16:1932165–1935289 (-)6.445e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.24e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.16e-12
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)7.237e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.934e-15
Glyma.17G064100 hypothetical protein AT5G57490:VDAC4:voltage dependent anion channel 4 1Chr17:4930968–4937489 (-)8.586e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.934e-15
Glyma.18G184200 hypothetical protein NA 1Chr18:44364673–44366631 (-)6.228e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)3.581e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.079e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.079e-11
Glyma.19G037400 hypothetical protein AT5G38820:AT5G38820:Transmembrane amino acid transporter family protein 1Chr19:5224298–5228610 (-)9.285e-11
Glyma.19G038000 hypothetical protein AT3G02350:GAUT9:galacturonosyltransferase 9 1Chr19:5321094–5324327 (+)9.285e-11
Glyma.19G038300 hypothetical protein NA 1Chr19:5381177–5383149 (+)9.285e-11
Glyma.19G038400 hypothetical protein AT3G02360:AT3G02360:6-phosphogluconate dehydrogenase family protein 1Chr19:5386122–5388865 (+)9.285e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.488e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.676e-12