Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41051

Metabolite ID
P41051
Deionized mass
94.0776 Da
Average m/z
189.1622
Average RT
20.5331
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
114
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

114 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)6.879e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.237e-14
Glyma.05G164700 hypothetical protein NA 3Chr05:35543931–35549196 (-)5.121e-15
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)7.608e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)2.541e-12
Glyma.07G010200 hypothetical protein NA 2Chr07:753451–763749 (-)4.54e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.194e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.996e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.996e-12
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)2.46e-14
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)2.46e-14
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)2.46e-14
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)2.401e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.345e-12
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)3.405e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)9.915e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)9.761e-14
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.353e-14
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)7.398e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.546e-15
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.289e-15
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.289e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.552e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.095e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.095e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.095e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.054e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)9.56e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.206e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)6.248e-11
Glyma.05G165200 hypothetical protein NA 1Chr05:35586701–35592272 (+)4.819e-11
Glyma.05G165300 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr05:35593651–35600917 (+)4.819e-11
Glyma.05G166000 hypothetical protein NA 1Chr05:35657133–35657621 (-)4.819e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.844e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.475e-15
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.475e-15
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.475e-15
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)6.91e-14
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)6.91e-14
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)4.637e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.04e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.04e-12
Glyma.06G132800 hypothetical protein AT4G27680:AT4G27680:P-loop containing nucleoside triphosphate hydrolases superfamily protein__AT5G53540:AT5G53540:P-loo… 1Chr06:10938746–10944330 (-)2.385e-11
Glyma.06G133000 hypothetical protein NA 1Chr06:10954830–10958961 (+)2.385e-11
Glyma.06G133400 hypothetical protein AT5G53570:AT5G53570:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr06:10976199–10981248 (-)2.385e-11
Glyma.06G133600 hypothetical protein NA 1Chr06:10992766–10995481 (+)2.385e-11
Glyma.06G133800 hypothetical protein NA 1Chr06:11001171–11002938 (-)2.385e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.464e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.185e-13
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.464e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.464e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.185e-13
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)2.93e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)1.249e-11
Glyma.07G010500 hypothetical protein AT1G55150:RH20:DEA(D/H)-box RNA helicase family protein 1Chr07:803172–810263 (+)4.539e-11
Glyma.07G010600 hypothetical protein NA 1Chr07:811039–816200 (+)4.54e-11
Glyma.07G010800 hypothetical protein NA 1Chr07:824697–827823 (-)4.54e-11
Glyma.07G010900 hypothetical protein AT1G55180:PLDEPSILON:phospholipase D alpha 4 1Chr07:830443–834361 (-)4.539e-11
Glyma.07G011100 hypothetical protein AT3G13700:AT3G13700:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr07:843406–847022 (+)4.539e-11
Glyma.07G011200 hypothetical protein AT5G49010:SLD5:DNA replication protein-like protein 1Chr07:847783–850968 (-)4.539e-11
Glyma.07G011600 hypothetical protein AT3G21250:ABCC8:multidrug resistance-associated protein 6 1Chr07:885910–891586 (+)4.54e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.255e-13
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.255e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.029e-16
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.194e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.194e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.194e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.194e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)4.711e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.567e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)5.558e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.503e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)4.206e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.747e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.747e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.747e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.831e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.831e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.348e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.866e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.866e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.996e-12
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)7.781e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)5.599e-11
Glyma.14G198600 hypothetical protein NA 1Chr14:46360801–46362778 (+)6.494e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)4.146e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.345e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.345e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.337e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.09e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.337e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.337e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.253e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.172e-14
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.786e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.786e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)2.48e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.301e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.73e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.73e-11
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)5.469e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)5.57e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.442e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.442e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.825e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.632e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)3.044e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)6.944e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)2.24e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.375e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.375e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)1.324e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.906e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.81e-14