Overview Annotation GWAS Evidence Associated genes

P40729

Metabolite ID
P40729
Deionized mass
274.1890 Da
Average m/z
549.3873
Average RT
20.3269
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
5
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

5 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)1.657e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)3.016e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)3.016e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)3.016e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)6.689e-11