Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40415

Metabolite ID
P40415
Deionized mass
494.2833 Da
Average m/z
495.2918
Average RT
20.1628
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
69
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

69 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.673e-15
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 3Chr14:47664851–47670630 (+)2.212e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)8.87e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)9.351e-11
Glyma.06G305300 hypothetical protein NA 2Chr06:49431590–49435985 (-)4.673e-15
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)1.473e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)2.483e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)8.003e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.67e-11
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)2.682e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)4.473e-12
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)4.913e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)2.996e-12
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)3.402e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)2.164e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)9.958e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.841e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.952e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.4e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.544e-13
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)8.322e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)8.322e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)8.322e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.236e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.633e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)1.41e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)1.41e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)1.201e-11
Glyma.06G305100 hypothetical protein NA 1Chr06:49413291–49417661 (-)9.604e-13
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)1.324e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.673e-15
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.581e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)6.245e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)4.459e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)9.609e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)2.183e-12
Glyma.07G096900 GmChl 2 AT1G19670:CLH1:chlorophyllase 1 1Chr07:9083837–9085839 (-)5.429e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)2.92e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.758e-11
Glyma.11G236800 hypothetical protein AT5G09360:LAC14:laccase 14 1Chr11:33157016–33161441 (+)4.969e-11
Glyma.11G237100 hypothetical protein NA 1Chr11:33172417–33173178 (+)4.969e-11
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)8.65e-12
Glyma.11G238100 hypothetical protein AT4G39820:AT4G39820:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:33261569–33264662 (+)5.5e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)6.102e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.833e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)7.233e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.939e-17
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.169e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.67e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.106e-16
Glyma.14G201900 hypothetical protein AT1G32210:ATDAD1:Defender against death (DAD family) protein__AT2G35520:DAD2:Defender against death (DAD family) protein 1Chr14:46736415–46739060 (-)3.732e-11
Glyma.14G211900 hypothetical protein AT5G16560:KAN:Homeodomain-like superfamily protein 1Chr14:47690466–47697203 (+)1.268e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.098e-17
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.989e-14
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)9.608e-11
Glyma.16G062500 hypothetical protein NA 1Chr16:6099546–6105267 (-)4.075e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.819e-13
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.914e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.807e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.069e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)9.351e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)1.731e-12
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)1.801e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)3.95e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)3.95e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)9.836e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.032e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)6.138e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)5.599e-12