Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40400

Metabolite ID
P40400
Deionized mass
343.2452 Da
Average m/z
344.2524
Average RT
20.1526
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)3.139e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)2.839e-14
Glyma.03G171500 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 2Chr03:38601039–38606103 (+)3.48e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.534e-12
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 2Chr18:51979095–51987062 (-)8.412e-12
Glyma.01G021000 hypothetical protein NA 1Chr01:2122589–2125447 (+)4.064e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)9.931e-12
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)2.374e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)2.374e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)2.374e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)9.651e-13
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)6.061e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.77e-12
Glyma.03G171200 hypothetical protein NA 1Chr03:38579274–38585023 (+)2.569e-11
Glyma.03G171400 hypothetical protein NA 1Chr03:38589307–38590274 (+)2.569e-11
Glyma.03G171600 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 1Chr03:38610797–38616471 (+)2.569e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.965e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.204e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)5.718e-14
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)4.527e-14
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)5.105e-11
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)3.052e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.515e-12
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)3.752e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.787e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.787e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.605e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.605e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.605e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.448e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.274e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.499e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.274e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.274e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.592e-11
Glyma.17G038400 hypothetical protein AT3G17330:ECT6:evolutionarily conserved C-terminal region 6 1Chr17:2836787–2841979 (-)4.795e-11
Glyma.17G038500 hypothetical protein NA 1Chr17:2843533–2853547 (-)4.795e-11
Glyma.17G039300 hypothetical protein AT4G15230:ABCG30:pleiotropic drug resistance 2__AT4G15233:ABCG42:ABC-2 and Plant PDR ABC-type transporter family protei… 1Chr17:2918657–2932426 (-)5.013e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)1.16e-12
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)6.949e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)5.025e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)1.011e-13