Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40376

Metabolite ID
P40376
Deionized mass
1016.5499 Da
Average m/z
1017.5568
Average RT
20.1344
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021000 hypothetical protein NA 4Chr03:2148298–2162954 (-)1.192e-14
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)1.192e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.401e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.804e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 2Chr03:2240686–2246512 (-)2.382e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.081e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.081e-12
Glyma.16G210200 hypothetical protein NA 2Chr16:36933402–36938940 (+)2.563e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)6.375e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)6.666e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)6.666e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)2.181e-13
Glyma.03G021100 hypothetical protein AT1G12650:AT1G12650:rRNA biosis RRP36-like protein 1Chr03:2162406–2167712 (+)3.16e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.53e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.867e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.02e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.177e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.516e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)5.931e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.864e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.484e-15
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.263e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)3.716e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.685e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.162e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.162e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.162e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.048e-11
Glyma.07G034300 hypothetical protein NA 1Chr07:2701469–2717662 (-)4.743e-12
Glyma.07G068100 hypothetical protein NA 1Chr07:6135478–6137135 (+)4.763e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.247e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.896e-11
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)1.652e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.401e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.869e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.995e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.995e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.081e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.827e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.698e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)9.257e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.513e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.899e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.174e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.924e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)2.356e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.228e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.804e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)7.132e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)8.51e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.672e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.672e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.538e-13