Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40341

Metabolite ID
P40341
Deionized mass
702.3979 Da
Average m/z
703.4030
Average RT
20.1116
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)2.99e-11
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.886e-12
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)5.307e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.292e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.281e-13
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)2.526e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)6.838e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.886e-12
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)1.514e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.979e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.979e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)6.653e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.069e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.207e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.205e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.469e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.212e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.205e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.49e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.281e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.281e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.281e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.281e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.931e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)9.581e-11
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)8.345e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)2.166e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.032e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.032e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)5.982e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)2.261e-13
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)2.261e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.436e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.436e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.436e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.436e-14
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)9.506e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.193e-15
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)9.506e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.264e-17
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.264e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.444e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.475e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.475e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.475e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.475e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.557e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.292e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)7.208e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)8.753e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)9.4e-21
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.88e-16
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)4.402e-13
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 1Chr14:47664851–47670630 (+)6.114e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.705e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.346e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.877e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.461e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.958e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.653e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.12e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.12e-11
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 1Chr18:3881382–3884162 (+)2.431e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)5.145e-13
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)5.255e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.838e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)9.506e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.156e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.155e-11
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)3.672e-13
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)3.672e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.025e-11