Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40266

Metabolite ID
P40266
Deionized mass
502.1854 Da
Average m/z
503.1892
Average RT
20.0670
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.872e-11
Glyma.03G145900 hypothetical protein AT5G06700:AT5G06700:trichome birefringence-like protein (DUF828) 2Chr03:36127816–36131230 (-)5.625e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)1.911e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.784e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.239e-15
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)1.551e-12
Glyma.03G145800 hypothetical protein AT5G06710:HAT14:homeobox leucine zipper protein 1Chr03:36122932–36125124 (+)8.008e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.435e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)6.961e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)5.489e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.474e-13
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.535e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.88e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.703e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.364e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.227e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.784e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.784e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.784e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.784e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)4.406e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.708e-11
Glyma.08G338200 hypothetical protein NA 1Chr08:45509289–45511145 (+)6.043e-11
Glyma.08G338600 hypothetical protein NA 1Chr08:45522321–45523727 (-)6.043e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)6.043e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.337e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.605e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.527e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.527e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.449e-12
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)7.208e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)7.208e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)2.161e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.038e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.038e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.152e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.628e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.309e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.57e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.309e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.309e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.666e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.872e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.872e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.872e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.872e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.307e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.37e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)3.322e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.641e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)5.641e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)8.574e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.391e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)4.932e-11
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)5.866e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 1Chr18:47102746–47129707 (+)7.7e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.853e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)6.11e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)5.255e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.042e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.043e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.919e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.523e-12