Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40246

Metabolite ID
P40246
Deionized mass
490.2287 Da
Average m/z
491.2373
Average RT
20.0504
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G096100 hypothetical protein AT1G58230:AT1G58230:binding protein 10Chr04:8566631–8625328 (+)8.208e-11
Glyma.04G096800 hypothetical protein AT4G24460:CLT2:CRT (chloroquine-resistance transporter)-like transporter 2 4Chr04:8747857–8778229 (-)7.579e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)9.337e-11
Glyma.04G096300 hypothetical protein NA 2Chr04:8635554–8654734 (+)4.184e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.865e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)7.995e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)4.451e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.204e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)6.613e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)6.613e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)6.613e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)6.613e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)6.613e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)6.613e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)6.613e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)1.063e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)6.871e-12
Glyma.04G096500 hypothetical protein NA 1Chr04:8664088–8675605 (+)7.579e-11
Glyma.04G096600 hypothetical protein AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 1Chr04:8693806–8724007 (-)7.579e-11
Glyma.04G096900 hypothetical protein NA 1Chr04:8778953–8796458 (-)7.579e-11
Glyma.04G097900 hypothetical protein AT5G65380:AT5G65380:MATE efflux family protein 1Chr04:8857667–8865249 (+)6.999e-11
Glyma.04G098100 hypothetical protein AT2G34990:AT2G34990:RING/U-box superfamily protein__AT1G72200:AT1G72200:RING/U-box superfamily protein 1Chr04:8887523–8888545 (-)8.41e-11
Glyma.04G098300 hypothetical protein NA 1Chr04:8910522–8912389 (-)8.41e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.864e-14
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)6.913e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)9.757e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.3e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.103e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.103e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.005e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.358e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.358e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.358e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.157e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.787e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)9.394e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)9.394e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)9.394e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.865e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.865e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.865e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.865e-12
Glyma.08G146100 hypothetical protein NA 1Chr08:11119305–11124078 (+)4.408e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.375e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)5.871e-13
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.391e-13
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)1.117e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.926e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.263e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.907e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.907e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)9.38e-15
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)9.38e-15
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)9.38e-15
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.239e-15
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)2.545e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.792e-11
Glyma.17G154000 hypothetical protein NA 1Chr17:12924078–12925703 (+)1.34e-11
Glyma.17G154300 hypothetical protein AT5G46610:AT5G46610:aluminum activated malate transporter family protein 1Chr17:12986575–12990804 (-)4.871e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)7.917e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)7.917e-11