Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40107

Metabolite ID
P40107
Deionized mass
530.3056 Da
Average m/z
531.3128
Average RT
19.9357
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 5Chr09:10129602–10197250 (-)1.197e-13
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)3.73e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.426e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)8.931e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)2.514e-12
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)7.281e-12
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)7.281e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.387e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.191e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.705e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.54e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.636e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.636e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)4.861e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.709e-13
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)9.726e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)9.726e-11
Glyma.07G034300 hypothetical protein NA 1Chr07:2701469–2717662 (-)1.835e-11
Glyma.08G182500 hypothetical protein NA 1Chr08:14639429–14643788 (+)9.758e-11
Glyma.08G183500 SWEET24 sugar efflux transporter SWEET24 AT5G13170:SAG29:senescence-associated 29 1Chr08:14724384–14726579 (+)4.419e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.326e-14
Glyma.09G082800 hypothetical protein NA 1Chr09:9780996–9782651 (-)6.906e-12
Glyma.09G083100 hypothetical protein AT4G20410:GSNAP:gamma-soluble NSF attachment protein 1Chr09:9932277–9939056 (+)6.906e-12
Glyma.09G083200 hypothetical protein NA 1Chr09:9946902–9950051 (+)6.906e-12
Glyma.09G083400 hypothetical protein NA 1Chr09:9979869–9982900 (-)4.17e-11
Glyma.09G083500 hypothetical protein AT4G20380:LSD1:LSD1 zinc finger family protein 1Chr09:9997929–10003928 (+)4.17e-11
Glyma.09G083600 hypothetical protein NA 1Chr09:10000680–10001256 (+)4.17e-11
Glyma.09G083800 hypothetical protein AT4G19490:VPS54:VPS54 1Chr09:10037182–10076014 (-)4.17e-11
Glyma.09G084600 hypothetical protein AT1G15440:PWP2:periodic tryptophan protein 2 1Chr09:10224996–10231257 (-)4.17e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.538e-14
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.355e-11
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)4.433e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.166e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.166e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)9.52e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.52e-13
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)7.119e-13
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.071e-11
Glyma.15G037400 hypothetical protein AT5G59420:ORP3C:OSBP(oxysterol binding protein)-related protein 3C 1Chr15:2950291–2955686 (-)6.386e-11
Glyma.15G037600 hypothetical protein AT2G29050:RBL1:RHOMBOID-like 1 1Chr15:2964304–2967785 (+)1.729e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.398e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.033e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.398e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.398e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.849e-11
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)4.191e-11
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)4.191e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)2.244e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)4.957e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)2.244e-12
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)2.244e-12
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)5.991e-12