Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39989

Metabolite ID
P39989
Deionized mass
931.4843 Da
Average m/z
932.4923
Average RT
19.8643
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)2.051e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.836e-11
Glyma.15G216900 hypothetical protein NA 2Chr15:35680524–35686654 (-)5.419e-19
Glyma.15G223600 hypothetical protein NA 2Chr15:40694344–40709542 (+)1.196e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)3.195e-11
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)4.228e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)5.335e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)9.812e-15
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)8.307e-11
Glyma.07G070300 hypothetical protein AT2G45910:AT2G45910:U-box domain-containing protein kinase family protein 1Chr07:6364435–6372387 (-)1.798e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)5.896e-14
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)5.896e-14
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)1.626e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)3.446e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)7.772e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)7.772e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)7.772e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)7.772e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)6.412e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.033e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.033e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.033e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.836e-11
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)2.051e-14
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)2.051e-14
Glyma.15G212800 hypothetical protein AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein 1Chr15:33408140–33467420 (+)2.213e-13
Glyma.15G216700 hypothetical protein NA 1Chr15:35649229–35652466 (-)5.419e-19
Glyma.15G217100 hypothetical protein NA 1Chr15:35830853–35832075 (-)5.419e-19
Glyma.15G222600 hypothetical protein NA 1Chr15:40455677–40458003 (+)2.617e-12
Glyma.15G232600 hypothetical protein NA 1Chr15:43719004–43723574 (+)3.35e-14
Glyma.15G232700 hypothetical protein NA 1Chr15:43725286–43732237 (+)4.985e-11
Glyma.15G233600 hypothetical protein NA 1Chr15:43971478–43972713 (+)1.38e-12
Glyma.15G261800 hypothetical protein AT1G56180:AT1G56180:ATP-dependent zinc metalloprotease 1Chr15:49400638–49411737 (-)1.104e-11
Glyma.15G262100 hypothetical protein AT1G79550:PGK:phosphoglycerate kinase 1Chr15:49447943–49451741 (+)2.814e-11
Glyma.15G262300 hypothetical protein AT1G79520:AT1G79520:Cation efflux family protein 1Chr15:49484391–49488666 (+)4.32e-12
Glyma.15G262400 hypothetical protein AT1G16310:AT1G16310:Cation efflux family protein__AT1G79520:AT1G79520:Cation efflux family protein 1Chr15:49495728–49499550 (+)5.717e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.554e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)4.747e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.948e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.561e-11