Overview Annotation GWAS Evidence Associated genes

P39964

Metabolite ID
P39964
Deionized mass
438.1871 Da
Average m/z
439.1945
Average RT
19.8516
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
14
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

14 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)3.783e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)3.889e-16
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.493e-12
Glyma.08G122600 hypothetical protein NA 2Chr08:9445153–9450502 (+)1.493e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)3.783e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)8.969e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.102e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.088e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.088e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.088e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.088e-12
Glyma.18G057500 hypothetical protein AT2G30170:PBCP:Protein phosphatase 2C family protein 1Chr18:5080060–5083756 (-)5.668e-11
Glyma.18G057600 hypothetical protein AT1G07020:AT1G07020:uncharacterized protein 1Chr18:5084210–5084791 (+)5.668e-11
Glyma.18G057900 hypothetical protein NA 1Chr18:5092695–5097651 (-)5.668e-11