Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39941

Metabolite ID
P39941
Deionized mass
491.2613 Da
Average m/z
492.2674
Average RT
19.8382
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.195e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.073e-13
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.508e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)2.893e-14
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.081e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.087e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 2Chr08:11525692–11536927 (+)1.784e-12
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)6.785e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)8.245e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.815e-12
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)5.619e-12
Glyma.16G213000 hypothetical protein AT1G48380:RHL1:root hair initiation protein root hairless 1 (RHL1) 2Chr16:37118629–37125494 (-)7.684e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)3.445e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)3.445e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)3.445e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.585e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)8.186e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.073e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.073e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.819e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)4.385e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.087e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.087e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.087e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.087e-11
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)4.323e-11
Glyma.08G211100 GLYI-9 putative lactoylglutathione lyase AT1G80160:GLYI7:Lactoylglutathione lyase / glyoxalase I family protein 1Chr08:17046316–17048640 (-)2.003e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.4e-13
Glyma.10G274200 hypothetical protein NA 1Chr10:49704427–49706416 (+)1.279e-12
Glyma.10G274300 COL22 AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein__AT1G68520:BBX14:B-box type zinc fing… 1Chr10:49716241–49718424 (-)1.279e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.105e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.293e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.639e-13
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.012e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.721e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.508e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.893e-14
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.081e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.537e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.537e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.064e-11