Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39857

Metabolite ID
P39857
Deionized mass
439.1950 Da
Average m/z
440.2032
Average RT
19.7823
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.411e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.118e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)2.15e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.411e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.475e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.475e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.014e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)2.908e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.017e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.481e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.043e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)2.957e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.786e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)7.248e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.361e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.572e-12
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)4.433e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.188e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.188e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)1.362e-11
Glyma.14G177100 hypothetical protein AT1G22450:COX6B:cytochrome C oxidase 6B 1Chr14:43661177–43665659 (+)1.358e-11
Glyma.14G178600 hypothetical protein NA 1Chr14:43963455–43970275 (+)1.26e-11
Glyma.14G178700 hypothetical protein NA 1Chr14:43978407–43980052 (+)1.26e-11
Glyma.14G178800 hypothetical protein AT1G28210:ATJ1:DNAJ heat shock family protein 1Chr14:43987725–44003499 (-)1.26e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.37e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.473e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.369e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.369e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.065e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.346e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.082e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.009e-16
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)6.496e-13
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)3.58e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.111e-16
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.258e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.111e-16
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.15e-14
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)3.781e-15
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)3.761e-11
Glyma.18G031900 hypothetical protein NA 1Chr18:2471787–2483157 (+)4.07e-11
Glyma.18G033800 hypothetical protein NA 1Chr18:2600457–2604130 (+)1.646e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.845e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.178e-11