Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39807

Metabolite ID
P39807
Deionized mass
541.2399 Da
Average m/z
542.2464
Average RT
19.7557
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 3Chr12:35879106–35881779 (+)3.749e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.345e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)9.23e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)7.744e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)3.325e-14
Glyma.12G015800 hypothetical protein NA 2Chr12:1126280–1132370 (-)5.462e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.481e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.481e-12
Glyma.16G018000 hypothetical protein NA 2Chr16:1601748–1607341 (-)1.54e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)4.049e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)1.694e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.861e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.4e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)9.563e-12
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)3.325e-14
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)5.372e-15
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.358e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.643e-17
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)7.952e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.362e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.355e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.155e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.765e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.765e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.244e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.161e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)1.398e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.991e-15
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.948e-15
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.991e-15
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.991e-15
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.948e-15
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)2.108e-13
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)8.013e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.806e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.4e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)7.257e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.351e-11
Glyma.12G014800 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 1Chr12:1071368–1079413 (+)3.4e-11
Glyma.12G196800 hypothetical protein AT4G15180:SDG2:SET domain protein 2 1Chr12:35784957–35801339 (+)3.749e-11
Glyma.12G197500 hypothetical protein NA 1Chr12:35869162–35874097 (+)3.749e-11
Glyma.12G197800 hypothetical protein NA 1Chr12:35892655–35896825 (-)3.749e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)9.921e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)9.366e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.481e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.481e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.024e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)6.06e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)2.12e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.438e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.661e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.596e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)2.919e-13
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.263e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.411e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)9.23e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)9.23e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.329e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)3.782e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.77e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.77e-12
Glyma.19G022500 hypothetical protein AT5G15230:GASA4:GAST1 protein homolog 4 1Chr19:2574642–2577346 (+)3.749e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.714e-11