Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39724

Metabolite ID
P39724
Deionized mass
551.2473 Da
Average m/z
552.2527
Average RT
19.7135
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
94
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

94 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.318e-12
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)8.46e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.454e-17
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)7.886e-11
Glyma.06G305300 hypothetical protein NA 2Chr06:49431590–49435985 (-)2.454e-17
Glyma.06G305600 hypothetical protein NA 2Chr06:49446542–49450635 (-)2.454e-17
Glyma.10G038200 hypothetical protein NA 2Chr10:3394443–3395342 (-)1.72e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)1.159e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.996e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)6.088e-14
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)8.537e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.318e-12
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)3.562e-11
Glyma.20G022500 hypothetical protein NA 2Chr20:2342943–2353164 (+)2.756e-14
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)7.317e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)8.46e-12
Glyma.02G109400 hypothetical protein NA 1Chr02:10495046–10497626 (-)2.968e-11
Glyma.02G109900 hypothetical protein AT2G03150:emb1579:ATP/GTP-binding protein family 1Chr02:10547851–10557930 (+)2.968e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.469e-11
Glyma.03G002100 hypothetical protein AT5G01930:MAN6:Glycosyl hydrolase superfamily protein 1Chr03:211934–216522 (+)4.669e-11
Glyma.03G002400 hypothetical protein AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 1Chr03:234217–238375 (-)4.669e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)1.71e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.64e-12
Glyma.06G305100 hypothetical protein NA 1Chr06:49413291–49417661 (-)2.963e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)1.432e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.57e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.749e-11
Glyma.08G311200 hypothetical protein AT2G42790:CSY3:citrate synthase 3 1Chr08:43046340–43054067 (+)1.259e-13
Glyma.08G311500 hypothetical protein NA 1Chr08:43083381–43085732 (+)5.082e-11
Glyma.08G311600 hypothetical protein NA 1Chr08:43086708–43088564 (+)4.86e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)2.726e-19
Glyma.09G011600 hypothetical protein NA 1Chr09:891635–893300 (+)1.468e-12
Glyma.09G011700 hypothetical protein NA 1Chr09:894858–897607 (-)6.358e-15
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)2.239e-14
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)5.759e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.443e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)5.787e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)7.081e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.823e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)3.302e-14
Glyma.11G126100 hypothetical protein AT1G08450:CRT3:calreticulin 3 1Chr11:9581659–9588340 (+)1.207e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.402e-15
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.402e-15
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.402e-15
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)5.83e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.002e-12
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)2.383e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.623e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.623e-13
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)2.062e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.552e-15
Glyma.13G156200 hypothetical protein AT1G80710:DRS1:DROUGHT SENSITIVE 1 1Chr13:27115515–27118951 (+)1.967e-11
Glyma.13G166300 hypothetical protein NA 1Chr13:28110251–28113628 (-)6.366e-12
Glyma.13G166900 hypothetical protein NA 1Chr13:28168741–28171815 (+)1.493e-12
Glyma.13G167000 hypothetical protein NA 1Chr13:28174907–28181099 (+)4.836e-11
Glyma.13G168000 hypothetical protein NA 1Chr13:28248114–28251357 (-)8.281e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)2.098e-11
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)2.237e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)7.91e-15
Glyma.13G189700 hypothetical protein AT5G07050:UMAMIT9:nodulin MtN21 /EamA-like transporter family protein 1Chr13:30310606–30315849 (-)1.17e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)2.967e-11
Glyma.15G009700 hypothetical protein NA 1Chr15:751766–753795 (+)3.011e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)3.899e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.444e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)5.523e-12
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)5.672e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.782e-13
Glyma.16G138400 hypothetical protein NA 1Chr16:29560913–29562163 (+)7.739e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.618e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)2.583e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)3.887e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.624e-13
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 1Chr16:30604586–30608656 (+)7.319e-11
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)2.783e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.624e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)5.786e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)3.009e-11
Glyma.16G180700 hypothetical protein AT1G02260:AT1G02260:Divalent ion symporter 1Chr16:34147998–34150710 (+)7.448e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.716e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.557e-13
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)4.077e-13
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)5.751e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)5.751e-11
Glyma.18G227400 hypothetical protein AT2G45720:AT2G45720:ARM repeat superfamily protein 1Chr18:51650951–51654636 (-)5.586e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.291e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.51e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.226e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.222e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.222e-16
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.992e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.03e-11
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)1.795e-11
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)3.562e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.391e-11