Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39698

Metabolite ID
P39698
Deionized mass
518.3368 Da
Average m/z
519.3436
Average RT
19.6893
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.487e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.705e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.705e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)6.651e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.68e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.897e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.207e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)3.851e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)3.851e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)3.851e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.68e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.076e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.076e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.076e-13
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)2.573e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.291e-20
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.353e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.353e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.902e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.902e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.902e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.902e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.251e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.678e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.591e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.591e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.719e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.719e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.541e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)7.251e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.465e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.398e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.465e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.465e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.309e-11
Glyma.15G262200 hypothetical protein AT3G12760:AT3G12760:defective in cullin neddylation protein 1Chr15:49465185–49472595 (-)1.787e-14
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)5.363e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.11e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.153e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)6.758e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.203e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.204e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.745e-13
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)1.424e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.046e-11