Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39654

Metabolite ID
P39654
Deionized mass
254.0699 Da
Average m/z
255.0781
Average RT
19.6640
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)4.679e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.517e-12
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)2.005e-15
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.352e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.477e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.125e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.125e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.104e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.994e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)5.292e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.15e-13
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)4.055e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)4.055e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.517e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.517e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.517e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.517e-12
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)4.86e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.579e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.131e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)6.386e-13
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)3.441e-13
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)6.828e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)1.735e-11
Glyma.10G038400 hypothetical protein NA 1Chr10:3400759–3409406 (+)8.335e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.864e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.864e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.864e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.864e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.421e-14
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)1.653e-11
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)8.723e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)5.131e-11
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)1.816e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)1.28e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.394e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.985e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.723e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.779e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.246e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.035e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.246e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.246e-13
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)7.669e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.767e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.034e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.731e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.731e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)4.143e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.477e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)3.833e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)3.833e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.456e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.456e-15
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.232e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.255e-14