Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39620

Metabolite ID
P39620
Deionized mass
720.4204 Da
Average m/z
721.4310
Average RT
19.6530
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
92
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

92 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.945e-15
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 3Chr03:5113019–5121557 (+)1.15e-17
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)7.17e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.311e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.552e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.785e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.382e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.732e-14
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)2.692e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)7.054e-11
Glyma.03G037300 hypothetical protein NA 1Chr03:4566741–4573890 (+)3.821e-11
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)8.389e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)1.828e-11
Glyma.03G145900 hypothetical protein AT5G06700:AT5G06700:trichome birefringence-like protein (DUF828) 1Chr03:36127816–36131230 (-)8.344e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.991e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.991e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.042e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.723e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.723e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.723e-12
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)3.544e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.097e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.983e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.915e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.594e-16
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.947e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.947e-14
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)5.411e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.005e-11
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)2.468e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.335e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.311e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.311e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.311e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.311e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.75e-15
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.151e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.151e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.143e-14
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.022e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.359e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.44e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)1.115e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.298e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.046e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.046e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.046e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.046e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.214e-13
Glyma.11G165900 hypothetical protein AT5G58510:AT5G58510:Rab3 GTPase-activating protein catalytic protein 1Chr11:15890687–15912099 (-)1.245e-11
Glyma.11G166100 hypothetical protein AT2G30110:UBA1:ubiquitin-activating enzyme 1 1Chr11:15941545–15948932 (+)1.245e-11
Glyma.11G166200 hypothetical protein NA 1Chr11:15951003–15963149 (-)1.245e-11
Glyma.11G167100 hypothetical protein NA 1Chr11:16310396–16317417 (+)1.245e-11
Glyma.11G167400 hypothetical protein NA 1Chr11:16491689–16494364 (-)1.245e-11
Glyma.11G167800 hypothetical protein NA 1Chr11:16649420–16666371 (+)1.245e-11
Glyma.11G169500 hypothetical protein NA 1Chr11:18001828–18002310 (+)1.245e-11
Glyma.11G169700 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18034188–18046104 (-)1.245e-11
Glyma.11G170100 hypothetical protein NA 1Chr11:18127748–18139401 (-)1.245e-11
Glyma.11G170300 hypothetical protein AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr11:18242402–18247271 (+)1.245e-11
Glyma.11G170700 hypothetical protein AT5G23880:CPSF100:cleavage and polyadenylation specificity factor 100 1Chr11:18313678–18328202 (-)1.245e-11
Glyma.11G170800 hypothetical protein NA 1Chr11:18343004–18346283 (+)1.245e-11
Glyma.11G170900 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18345392–18359356 (-)1.245e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.073e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.073e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.101e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.694e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.052e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.937e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.552e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)4.712e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.424e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.052e-16
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)1.376e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.711e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.084e-12
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)3.8e-15
Glyma.16G159100 hypothetical protein NA 1Chr16:31889835–31894662 (+)1.956e-11
Glyma.16G161000 hypothetical protein NA 1Chr16:32027849–32031609 (-)9.315e-11
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)9.023e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.972e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.799e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.359e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.359e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)1.867e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)3.167e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)4.261e-12
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)3.549e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.109e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.826e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)9.487e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.772e-13
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)5.744e-11