P39613
Metabolite ID
P39613
Deionized mass
543.2297 Da
Average m/z
544.2379
Average RT
19.6511
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
103
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
103 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.16G196900 | hypothetical protein | NA | 5 | Chr16:35841279–35846894 (-) | 1.27e-16 | |
| Glyma.16G196800 | hypothetical protein | AT5G07250:RBL3:RHOMBOID-like protein 3 | 4 | Chr16:35831912–35835153 (+) | 1.046e-14 | |
| Glyma.13G134400 | hypothetical protein | AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein | 3 | Chr13:24677399–24693129 (-) | 2.282e-11 | |
| Glyma.16G210200 | hypothetical protein | NA | 3 | Chr16:36933402–36938940 (+) | 1.861e-11 | |
| Glyma.20G107200 | hypothetical protein | AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein | 3 | Chr20:34984922–34988496 (+) | 1.3e-14 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 8.671e-18 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 8.672e-18 | |
| Glyma.14G201600 | hypothetical protein | NA | 2 | Chr14:46703283–46706500 (+) | 2.547e-12 | |
| Glyma.16G209300 | hypothetical protein | NA | 2 | Chr16:36856833–36863994 (-) | 1.104e-11 | |
| Glyma.01G169700 | hypothetical protein | AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 | 1 | Chr01:50715084–50719427 (-) | 2.028e-11 | |
| Glyma.01G169800 | hypothetical protein | AT4G36400:D2HGDH:FAD-linked oxidases family protein | 1 | Chr01:50726088–50733347 (-) | 2.028e-11 | |
| Glyma.02G109400 | hypothetical protein | NA | 1 | Chr02:10495046–10497626 (-) | 9.851e-11 | |
| Glyma.02G109900 | hypothetical protein | AT2G03150:emb1579:ATP/GTP-binding protein family | 1 | Chr02:10547851–10557930 (+) | 9.851e-11 | |
| Glyma.02G116900 | hypothetical protein | NA | 1 | Chr02:11394318–11395331 (-) | 2.959e-11 | |
| Glyma.02G133800 | hypothetical protein | AT1G49660:CXE5:carboxyesterase 5 | 1 | Chr02:13850366–13851962 (-) | 4.942e-11 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 1.407e-11 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 2.195e-13 | |
| Glyma.05G223100 | hypothetical protein | AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein | 1 | Chr05:40259388–40262641 (+) | 2.779e-11 | |
| Glyma.05G224500 | hypothetical protein | NA | 1 | Chr05:40342583–40345336 (+) | 4.892e-11 | |
| Glyma.05G224700 | hypothetical protein | NA | 1 | Chr05:40351005–40361888 (+) | 1.628e-12 | |
| Glyma.05G226000 | hypothetical protein | AT5G19730:AT5G19730:Pectin lyase-like superfamily protein | 1 | Chr05:40458098–40461736 (+) | 3.286e-12 | |
| Glyma.05G226400 | hypothetical protein | AT4G29140:ADS1:MATE efflux family protein | 1 | Chr05:40480968–40482410 (-) | 9.363e-12 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 2.868e-11 | |
| Glyma.06G085900 | hypothetical protein | AT2G25830:AT2G25830:YebC-like protein | 1 | Chr06:6617102–6622706 (-) | 1.254e-11 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 1.429e-11 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 1.429e-11 | |
| Glyma.06G126500 | hypothetical protein | AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr06:10367536–10373426 (-) | 6.107e-12 | |
| Glyma.06G126900 | hypothetical protein | AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) | 1 | Chr06:10403126–10408307 (-) | 5.2e-12 | |
| Glyma.06G130900 | hypothetical protein | AT4G27800:TAP38:thylakoid-associated phosphatase 38 | 1 | Chr06:10753446–10757827 (+) | 2.741e-12 | |
| Glyma.06G303700 | hypothetical protein | AT1G05230:HDG2:homeodomain GLABROUS 2 | 1 | Chr06:49315918–49324382 (+) | 5.685e-12 | |
| Glyma.06G303800 | hypothetical protein | AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative | 1 | Chr06:49328417–49330906 (-) | 5.685e-12 | |
| Glyma.06G313500 | hypothetical protein | NA | 1 | Chr06:50191600–50203098 (-) | 5.765e-11 | |
| Glyma.07G015700 | hypothetical protein | AT1G79750:NADP-ME4:NADP-malic enzyme 4 | 1 | Chr07:1244977–1251198 (-) | 3.071e-11 | |
| Glyma.07G021800 | hypothetical protein | AT1G80920:J8:Chaperone DnaJ-domain superfamily protein | 1 | Chr07:1697119–1698666 (+) | 3.373e-11 | |
| Glyma.07G075400 | hypothetical protein | NA | 1 | Chr07:6849233–6853058 (+) | 7.774e-11 | |
| Glyma.08G182000 | hypothetical protein | NA | 1 | Chr08:14601875–14604750 (+) | 3.588e-11 | |
| Glyma.08G204800 | hypothetical protein | AT3G16140:PSAH-1:photosystem I subunit H-1 | 1 | Chr08:16601039–16602646 (+) | 9.53e-11 | |
| Glyma.08G338900 | hypothetical protein | NA | 1 | Chr08:45536950–45543029 (-) | 4.4e-11 | |
| Glyma.09G058900 | hypothetical protein | NA | 1 | Chr09:5397968–5404650 (-) | 1.171e-11 | |
| Glyma.09G253800 | hypothetical protein | NA | 1 | Chr09:47356240–47357763 (-) | 6.262e-11 | |
| Glyma.09G253900 | hypothetical protein | NA | 1 | Chr09:47359742–47364806 (-) | 6.262e-11 | |
| Glyma.10G028500 | hypothetical protein | NA | 1 | Chr10:2476846–2478953 (+) | 2.983e-11 | |
| Glyma.10G028700 | hypothetical protein | AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain | 1 | Chr10:2485817–2497071 (-) | 2.983e-11 | |
| Glyma.11G049700 | hypothetical protein | NA | 1 | Chr11:3731308–3734534 (+) | 9.748e-11 | |
| Glyma.11G241000 | hypothetical protein | AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein | 1 | Chr11:33526493–33531210 (+) | 2.955e-11 | |
| Glyma.11G241400 | hypothetical protein | AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr11:33556332–33563163 (-) | 6.452e-11 | |
| Glyma.11G241900 | hypothetical protein | NA | 1 | Chr11:33589346–33594428 (-) | 6.452e-11 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 3.198e-13 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 3.198e-13 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 1.934e-11 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 1.934e-11 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 1.771e-12 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 1 | Chr12:36473422–36498915 (+) | 1.771e-12 | |
| Glyma.13G095000 | hypothetical protein | NA | 1 | Chr13:21005327–21006774 (-) | 4.216e-11 | |
| Glyma.13G134300 | hypothetical protein | NA | 1 | Chr13:24664171–24665742 (-) | 2.282e-11 | |
| Glyma.13G134500 | hypothetical protein | AT3G09560:PAH1:Lipin family protein | 1 | Chr13:24696109–24705068 (-) | 8.177e-11 | |
| Glyma.13G135100 | hypothetical protein | AT5G02750:SGR9:RING/U-box superfamily protein | 1 | Chr13:24744740–24746437 (+) | 3.728e-12 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 1.568e-17 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 1.568e-17 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 8.671e-18 | |
| Glyma.13G136500 | hypothetical protein | NA | 1 | Chr13:24910198–24916336 (-) | 1.177e-11 | |
| Glyma.14G201700 | hypothetical protein | NA | 1 | Chr14:46711634–46715644 (-) | 2.547e-12 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 2.902e-11 | |
| Glyma.16G025300 | hypothetical protein | NA | 1 | Chr16:2438122–2440528 (-) | 9.533e-12 | |
| Glyma.16G025400 | hypothetical protein | AT2G46430:CNGC3:cyclic nucleotide gated channel 3 | 1 | Chr16:2443212–2450834 (-) | 9.533e-12 | |
| Glyma.16G116200 | hypothetical protein | AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein | 1 | Chr16:25892277–25904773 (+) | 3.502e-11 | |
| Glyma.16G116500 | hypothetical protein | AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein | 1 | Chr16:26057276–26069534 (+) | 2.006e-11 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 5.909e-11 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 1 | Chr16:26324650–26336836 (+) | 5.981e-11 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 3.537e-11 | |
| Glyma.16G139500 | hypothetical protein | AT5G66550:AT5G66550:Maf-like protein | 1 | Chr16:29686243–29690410 (-) | 3.26e-12 | |
| Glyma.16G179800 | hypothetical protein | AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein | 1 | Chr16:34022480–34027055 (-) | 3.611e-13 | |
| Glyma.16G180000 | hypothetical protein | NA | 1 | Chr16:34064572–34069421 (+) | 7.728e-11 | |
| Glyma.16G180100 | hypothetical protein | NA | 1 | Chr16:34070806–34076053 (+) | 7.728e-11 | |
| Glyma.16G189000 | hypothetical protein | NA | 1 | Chr16:35160485–35167548 (-) | 2.343e-12 | |
| Glyma.16G189100 | hypothetical protein | AT1G05190:emb2394:Ribosomal protein L6 family | 1 | Chr16:35170253–35173950 (-) | 8.135e-21 | |
| Glyma.16G189200 | hypothetical protein | AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein | 1 | Chr16:35177846–35179798 (+) | 8.581e-13 | |
| Glyma.16G196200 | HSF-32 | heat stress transcription factor 32 | AT5G62020:HSFB2A:heat shock transcription factor B2A | 1 | Chr16:35760178–35761852 (+) | 1.209e-15 |
| Glyma.16G196400 | hypothetical protein | AT5G07270:XBAT33:uncharacterized protein | 1 | Chr16:35782198–35790495 (-) | 3.319e-15 | |
| Glyma.16G205600 | hypothetical protein | AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein | 1 | Chr16:36633000–36634978 (+) | 9.573e-11 | |
| Glyma.16G209000 | hypothetical protein | NA | 1 | Chr16:36841786–36845498 (-) | 4.388e-12 | |
| Glyma.16G209900 | hypothetical protein | NA | 1 | Chr16:36919141–36924601 (+) | 1.861e-11 | |
| Glyma.17G064000 | hypothetical protein | AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein | 1 | Chr17:4924830–4930155 (-) | 5.812e-12 | |
| Glyma.17G064200 | hypothetical protein | AT5G57500:AT5G57500:Galactosyltransferase family protein | 1 | Chr17:4943412–4944357 (-) | 5.812e-12 | |
| Glyma.17G092800 | hypothetical protein | NA | 1 | Chr17:7253511–7255621 (-) | 6.14e-11 | |
| Glyma.18G263900 | hypothetical protein | AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein | 1 | Chr18:54907058–54912936 (-) | 1.761e-12 | |
| Glyma.18G266100 | hypothetical protein | NA | 1 | Chr18:55052591–55056489 (-) | 2.522e-12 | |
| Glyma.18G266500 | hypothetical protein | NA | 1 | Chr18:55088284–55091427 (-) | 3.082e-13 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 4.431e-13 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 4.431e-13 | |
| Glyma.19G218100 | hypothetical protein | AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 | 1 | Chr19:47082133–47085750 (+) | 6.394e-11 | |
| Glyma.20G019500 | hypothetical protein | AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme | 1 | Chr20:2039210–2040459 (+) | 2.917e-11 | |
| Glyma.20G019800 | hypothetical protein | AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein | 1 | Chr20:2051817–2057262 (+) | 2.572e-11 | |
| Glyma.20G106400 | hypothetical protein | AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein | 1 | Chr20:34888699–34893605 (-) | 4.977e-11 | |
| Glyma.20G106800 | hypothetical protein | AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein | 1 | Chr20:34935548–34940516 (-) | 1.252e-11 | |
| Glyma.20G106900 | hypothetical protein | NA | 1 | Chr20:34962043–34967985 (+) | 1.417e-14 | |
| Glyma.20G107000 | hypothetical protein | NA | 1 | Chr20:34968161–34968457 (+) | 3.06e-11 | |
| Glyma.20G107500 | hypothetical protein | AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr20:35011922–35015196 (-) | 1.462e-12 | |
| Glyma.20G108900 | hypothetical protein | AT4G24175:AT4G24175:kinesin-like protein | 1 | Chr20:35119868–35122488 (+) | 5.305e-11 | |
| Glyma.20G109000 | hypothetical protein | AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein | 1 | Chr20:35134138–35152085 (-) | 5.437e-11 | |
| Glyma.20G109100 | hypothetical protein | AT1G14590:AT1G14590:Nucleotide-diphospho-sugar transferase family protein | 1 | Chr20:35166747–35171332 (+) | 5.437e-11 | |
| Glyma.20G109800 | hypothetical protein | AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr20:35213258–35219502 (+) | 4.11e-13 | |
| Glyma.20G129900 | hypothetical protein | NA | 1 | Chr20:37091399–37092697 (-) | 2.345e-11 |