Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39609

Metabolite ID
P39609
Deionized mass
996.5363 Da
Average m/z
997.5342
Average RT
19.6501
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.737e-12
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)2.275e-11
Glyma.15G223600 hypothetical protein NA 2Chr15:40694344–40709542 (+)1.053e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.681e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.737e-12
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)1.726e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)1.726e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)2.267e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.712e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.712e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.712e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.611e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.611e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.969e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.327e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.263e-12
Glyma.07G058600 hypothetical protein AT5G12230:MED19A:mediator of RNA polymerase II transcription subunit 19a-like protein 1Chr07:5240996–5247125 (-)8.561e-11
Glyma.07G058700 hypothetical protein AT1G30240:AT1G30240:proline-, glutamic acid/leucine-rich protein 1Chr07:5251199–5260710 (+)8.561e-11
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)8.529e-11
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)1.618e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)3.177e-11
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)2.931e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)8.413e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.643e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.643e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.643e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)5.117e-11
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)2.275e-11
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)2.275e-11
Glyma.15G211700 hypothetical protein NA 1Chr15:32833244–32834933 (+)2.8e-11
Glyma.15G212100 hypothetical protein NA 1Chr15:32909983–32912927 (+)2.8e-11
Glyma.15G213400 hypothetical protein AT1G79570:AT1G79570:kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein 1Chr15:33692094–33700843 (-)2.8e-11
Glyma.15G214500 hypothetical protein NA 1Chr15:34515146–34523400 (-)2.8e-11
Glyma.15G216700 hypothetical protein NA 1Chr15:35649229–35652466 (-)1.89e-12
Glyma.15G216900 hypothetical protein NA 1Chr15:35680524–35686654 (-)1.89e-12
Glyma.15G217100 hypothetical protein NA 1Chr15:35830853–35832075 (-)1.89e-12
Glyma.15G219200 hypothetical protein NA 1Chr15:37859579–37901021 (-)3.078e-11
Glyma.15G222600 hypothetical protein NA 1Chr15:40455677–40458003 (+)8.2e-14
Glyma.15G224500 hypothetical protein NA 1Chr15:40874637–40886928 (-)1.585e-11
Glyma.15G233600 hypothetical protein NA 1Chr15:43971478–43972713 (+)1.241e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.051e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.607e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.561e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.246e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)3.811e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)3.811e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.429e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.135e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.135e-12
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)6.027e-11
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)2.957e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)9.846e-11