Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39556

Metabolite ID
P39556
Deionized mass
590.3269 Da
Average m/z
591.3358
Average RT
19.6186
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)4.963e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)5.284e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.854e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.402e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.452e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.704e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.704e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)9.477e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.04e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.592e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.592e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.168e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.398e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.944e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.208e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)7.618e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)7.618e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)7.618e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.51e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.427e-14
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.427e-14
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.427e-14
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.219e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.268e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)2.013e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)8.098e-13
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)5.723e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.854e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.854e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.854e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.854e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.397e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.938e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.271e-11
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)1.559e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)3.443e-11
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)5.076e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.892e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.892e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.225e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.225e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.061e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.061e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.073e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.579e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.452e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.095e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.222e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.223e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.704e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.124e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.948e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.477e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.619e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.987e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.619e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.619e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.368e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)5.103e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.284e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)5.284e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.157e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.261e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.498e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)5.498e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.593e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.095e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.067e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.812e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.812e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.988e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.017e-11