Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39544

Metabolite ID
P39544
Deionized mass
338.0654 Da
Average m/z
339.0725
Average RT
19.6097
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.617e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)5.607e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)7.866e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.185e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.109e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.109e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.109e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.874e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)3.622e-12
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)3.885e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)3.885e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)7.707e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)7.707e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.211e-14
Glyma.08G136700 hypothetical protein NA 1Chr08:10457207–10460163 (-)1.134e-12
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)6.048e-11
Glyma.09G225300 hypothetical protein AT5G13460:IQD11:IQ-domain 11 1Chr09:44991009–44994727 (+)4.14e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.025e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.916e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)3.631e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.674e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.674e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.926e-16
Glyma.13G156200 hypothetical protein AT1G80710:DRS1:DROUGHT SENSITIVE 1 1Chr13:27115515–27118951 (+)7.214e-13
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)6.634e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)7.256e-14
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.329e-13
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)2.791e-12
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)2.791e-12
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)2.791e-12
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)1.265e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)8.286e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.017e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.931e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.151e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.151e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)6.143e-13
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)7.215e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)1.145e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)5.156e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.3e-14
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.64e-12