Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39534

Metabolite ID
P39534
Deionized mass
712.3626 Da
Average m/z
713.3699
Average RT
19.6037
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
70
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

70 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)9.066e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.056e-11
Glyma.03G055900 hypothetical protein AT2G38280:FAC1:AMP deaminase, putative / myoadenylate deaminase 2Chr03:7693451–7703679 (+)1.787e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)8.905e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.918e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.918e-12
Glyma.13G183400 hypothetical protein NA 2Chr13:29666942–29670201 (+)1.817e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.642e-12
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)5.799e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)6.911e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)1.515e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)1.926e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)9.269e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.248e-12
Glyma.03G055100 hypothetical protein AT4G33070:AT4G33070:Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 1Chr03:7561669–7566253 (-)9.938e-11
Glyma.03G056300 hypothetical protein AT2G38270:CXIP2:CAX-interacting protein 2 1Chr03:7757624–7759963 (+)2.682e-11
Glyma.03G073700 hypothetical protein NA 1Chr03:17859994–17860863 (+)7.584e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.567e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.899e-14
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.339e-14
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)1.591e-11
Glyma.04G107900 hypothetical protein AT3G53990:AT3G53990:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr04:11421366–11422972 (-)2.619e-14
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)6.709e-14
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)6.192e-11
Glyma.05G131100 hypothetical protein AT5G60620:GPAT9:glycerol-3-phosphate acyltransferase 9 1Chr05:32411641–32419257 (+)4.302e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.302e-13
Glyma.05G131500 hypothetical protein AT5G44800:CHR4:chromatin remodeling 4 1Chr05:32446303–32473428 (+)2.081e-12
Glyma.05G233500 hypothetical protein NA 1Chr05:41066769–41067350 (-)1.261e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.764e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.847e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.581e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.581e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)4.413e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.685e-12
Glyma.08G211100 GLYI-9 putative lactoylglutathione lyase AT1G80160:GLYI7:Lactoylglutathione lyase / glyoxalase I family protein 1Chr08:17046316–17048640 (-)1.847e-12
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)7.37e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)3.418e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.396e-12
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)7.57e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.491e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.557e-11
Glyma.11G117500 hypothetical protein NA 1Chr11:8932743–8933846 (-)4.437e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)8.99e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.495e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.495e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.038e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.038e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)2.176e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.037e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.037e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.905e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.116e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.116e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.918e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)6.746e-15
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)5.799e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)6.097e-12
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)2.451e-12
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)7.373e-12
Glyma.14G015100 hypothetical protein NA 1Chr14:1085839–1088597 (+)7.781e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.759e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.812e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)8.096e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.056e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.166e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.166e-13
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)9.822e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.712e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)9.822e-11
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)4.451e-13