P39439
Metabolite ID
P39439
Deionized mass
475.2666 Da
Average m/z
476.2730
Average RT
19.5459
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.18G090600 | hypothetical protein | AT3G20290:EHD1:EPS15 homology domain 1 | 4 | Chr18:8991445–9001857 (-) | 7.176e-11 | |
| Glyma.16G147900 | hypothetical protein | NA | 3 | Chr16:30864919–30872425 (+) | 8.056e-11 | |
| Glyma.16G209300 | hypothetical protein | NA | 3 | Chr16:36856833–36863994 (-) | 1.514e-11 | |
| Glyma.08G122200 | hypothetical protein | NA | 2 | Chr08:9416766–9429995 (-) | 6.148e-12 | |
| Glyma.08G123500 | hypothetical protein | NA | 2 | Chr08:9494946–9505931 (-) | 7.233e-11 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 4.551e-12 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 4.551e-12 | |
| Glyma.14G067800 | hypothetical protein | AT3G12380:ARP5:actin-related protein 5 | 2 | Chr14:5675792–5680343 (+) | 4.997e-14 | |
| Glyma.16G147400 | hypothetical protein | NA | 2 | Chr16:30817535–30821568 (+) | 5.076e-12 | |
| Glyma.18G090100 | hypothetical protein | NA | 2 | Chr18:8939839–8941585 (+) | 7.176e-11 | |
| Glyma.02G133800 | hypothetical protein | AT1G49660:CXE5:carboxyesterase 5 | 1 | Chr02:13850366–13851962 (-) | 1.774e-12 | |
| Glyma.02G205300 | hypothetical protein | NA | 1 | Chr02:39037472–39038396 (-) | 7.219e-11 | |
| Glyma.02G287700 | hypothetical protein | AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … | 1 | Chr02:46797935–46805223 (-) | 1.943e-12 | |
| Glyma.02G303600 | hypothetical protein | NA | 1 | Chr02:47883626–47887124 (-) | 3.524e-11 | |
| Glyma.02G303700 | hypothetical protein | NA | 1 | Chr02:47892900–47896207 (+) | 3.524e-11 | |
| Glyma.02G304000 | hypothetical protein | AT1G51350:AT1G51350:ARM repeat superfamily protein | 1 | Chr02:47908136–47915999 (-) | 3.524e-11 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 2.806e-11 | |
| Glyma.03G209700 | hypothetical protein | NA | 1 | Chr03:41646792–41648527 (+) | 9.998e-11 | |
| Glyma.04G112200 | hypothetical protein | AT5G51750:SBT1.3:subtilase 1.3 | 1 | Chr04:12562882–12565006 (+) | 2.931e-11 | |
| Glyma.04G190200 | hypothetical protein | AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 | 1 | Chr04:46086785–46089618 (-) | 2.997e-12 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 6.912e-11 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 7.173e-13 | |
| Glyma.06G112300 | hypothetical protein | AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase | 1 | Chr06:9113982–9118848 (-) | 1.587e-13 | |
| Glyma.06G112600 | hypothetical protein | AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr06:9134358–9144986 (+) | 1.587e-13 | |
| Glyma.06G112700 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr06:9156973–9158659 (+) | 1.587e-13 | |
| Glyma.07G068200 | hypothetical protein | AT4G00310:EDA8:Putative membrane lipoprotein | 1 | Chr07:6146155–6148036 (-) | 7.119e-11 | |
| Glyma.08G122300 | hypothetical protein | AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 | 1 | Chr08:9435391–9437279 (+) | 7.233e-11 | |
| Glyma.08G122500 | hypothetical protein | NA | 1 | Chr08:9441329–9445315 (-) | 7.233e-11 | |
| Glyma.08G122600 | hypothetical protein | NA | 1 | Chr08:9445153–9450502 (+) | 6.148e-12 | |
| Glyma.08G122700 | hypothetical protein | AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) | 1 | Chr08:9452604–9458932 (+) | 7.233e-11 | |
| Glyma.08G150100 | hypothetical protein | AT2G44450:BGLU15:beta glucosidase 15 | 1 | Chr08:11525692–11536927 (+) | 3.848e-11 | |
| Glyma.09G246700 | hypothetical protein | AT1G22840:CYTC-1:CYTOCHROME C-1 | 1 | Chr09:46835469–46838091 (-) | 6.447e-12 | |
| Glyma.09G275500 | hypothetical protein | NA | 1 | Chr09:49105837–49106989 (+) | 1.723e-12 | |
| Glyma.11G162500 | hypothetical protein | AT2G40435:AT2G40435:transcription factor SCREAM-like protein | 1 | Chr11:15087390–15090683 (-) | 3.31e-11 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 2.785e-12 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 2.785e-12 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 6.223e-13 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 6.223e-13 | |
| Glyma.12G202400 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:36289704–36295084 (-) | 2.159e-11 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 4.551e-12 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 4.551e-12 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 1.965e-11 | |
| Glyma.13G203200 | hypothetical protein | AT3G52105:AT3G52105:DIS3-exonuclease-like protein | 1 | Chr13:31720004–31725252 (+) | 1.105e-11 | |
| Glyma.13G203300 | hypothetical protein | AT3G63530:BB:RING/U-box superfamily protein | 1 | Chr13:31727841–31735910 (-) | 1.105e-11 | |
| Glyma.13G203700 | hypothetical protein | NA | 1 | Chr13:31780982–31784218 (+) | 1.105e-11 | |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 3.772e-12 | |
| Glyma.13G204700 | hypothetical protein | AT1G11720:SS3:starch synthase 3 | 1 | Chr13:31872482–31883107 (-) | 8.155e-11 | |
| Glyma.13G204800 | hypothetical protein | AT4G04640:ATPC1:ATPase, F1 complex, gamma subunit protein | 1 | Chr13:31885462–31887911 (-) | 8.155e-11 | |
| Glyma.13G204900 | hypothetical protein | AT1G64570:DUO3:Homeodomain-like superfamily protein | 1 | Chr13:31888324–31898942 (-) | 8.155e-11 | |
| Glyma.14G068500 | hypothetical protein | NA | 1 | Chr14:5741909–5745574 (-) | 9.257e-11 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 7.984e-13 | |
| Glyma.14G071700 | hypothetical protein | AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 | 1 | Chr14:6037810–6041899 (+) | 1.397e-11 | |
| Glyma.14G071800 | hypothetical protein | NA | 1 | Chr14:6040746–6041899 (-) | 1.397e-11 | |
| Glyma.15G121100 | hypothetical protein | NA | 1 | Chr15:9567797–9570248 (+) | 8.868e-14 | |
| Glyma.15G121300 | hypothetical protein | AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 | 1 | Chr15:9584685–9590201 (-) | 3.154e-13 | |
| Glyma.15G121500 | hypothetical protein | AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein | 1 | Chr15:9602794–9615281 (+) | 8.868e-14 | |
| Glyma.15G121800 | hypothetical protein | NA | 1 | Chr15:9643746–9648073 (+) | 8.868e-14 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 1.843e-11 | |
| Glyma.16G147500 | hypothetical protein | NA | 1 | Chr16:30832490–30834904 (+) | 9.672e-11 | |
| Glyma.17G144000 | hypothetical protein | AT4G16760:ACX1:acyl-CoA oxidase 1 | 1 | Chr17:11759547–11765498 (-) | 8.913e-11 | |
| Glyma.17G258400 | hypothetical protein | AT1G30755:AT1G30755:elongation factor G, putative (DUF668) | 1 | Chr17:41248979–41254225 (+) | 1.122e-11 | |
| Glyma.17G258700 | hypothetical protein | AT4G24190:SHD:Chaperone protein htpG family protein | 1 | Chr17:41280124–41284980 (-) | 1.676e-12 | |
| Glyma.18G089800 | hypothetical protein | AT5G55250:IAMT1:IAA carboxylmethyltransferase 1 | 1 | Chr18:8921173–8925579 (+) | 7.176e-11 | |
| Glyma.18G090300 | hypothetical protein | AT5G55210:AT5G55210:uncharacterized protein | 1 | Chr18:8954961–8957926 (+) | 7.176e-11 | |
| Glyma.18G090500 | hypothetical protein | AT4G26810:AT4G26810:SWIB/MDM2 domain superfamily protein | 1 | Chr18:8979176–8986302 (-) | 7.176e-11 | |
| Glyma.18G090800 | hypothetical protein | AT3G20300:AT3G20300:extracellular ligand-gated ion channel protein (DUF3537) | 1 | Chr18:9018768–9024832 (-) | 7.175e-11 | |
| Glyma.20G019800 | hypothetical protein | AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein | 1 | Chr20:2051817–2057262 (+) | 1.115e-12 |