Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39412

Metabolite ID
P39412
Deionized mass
102.0462 Da
Average m/z
103.0532
Average RT
19.5324
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.029e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.651e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.921e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 2Chr12:37131153–37134096 (+)6.262e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.029e-14
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 2Chr16:26057276–26069534 (+)8.794e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)6.633e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.553e-14
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)2.094e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)7.759e-11
Glyma.18G201700 hypothetical protein NA 2Chr18:48175554–48180264 (+)8.009e-15
Glyma.01G018000 hypothetical protein NA 1Chr01:1736217–1737749 (-)2.063e-11
Glyma.01G018300 hypothetical protein AT5G46740:UBP21:ubiquitin-specific protease 21 1Chr01:1750027–1754223 (-)2.793e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.468e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.468e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)4.477e-13
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)1.893e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.67e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.156e-12
Glyma.05G182100 hypothetical protein NA 1Chr05:37003489–37004855 (-)6.805e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.436e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.07e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.595e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.07e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.07e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.595e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.203e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.921e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.921e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.921e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.921e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.34e-15
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.933e-11
Glyma.11G065000 hypothetical protein AT4G36730:GBF1:G-box binding factor 1 1Chr11:4916855–4922192 (+)5.395e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)4.381e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.191e-11
Glyma.13G238400 hypothetical protein AT3G46930:AT3G46930:Protein kinase superfamily protein__AT5G58950:AT5G58950:Protein kinase superfamily protein 1Chr13:34872388–34881743 (-)4.779e-13
Glyma.14G045100 hypothetical protein AT3G43600:AAO2:aldehyde oxidase 2__AT1G04580:AO4:aldehyde oxidase 4__AT5G20960:AO1:aldehyde oxidase 1__AT2G27150:AAO3:a… 1Chr14:3438828–3448015 (-)8.918e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.474e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.796e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)6.656e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.029e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.995e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.029e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.029e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.029e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.029e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)4.01e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.73e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)2.288e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.652e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.651e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.031e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.204e-15
Glyma.16G166900 hypothetical protein NA 1Chr16:32619260–32629262 (-)7.246e-13
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)6.682e-13
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)4.039e-11
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)1.194e-11