Overview Annotation GWAS Evidence Associated genes

P39374

Metabolite ID
P39374
Deionized mass
528.2875 Da
Average m/z
529.2947
Average RT
19.5126
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
15
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

15 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.881e-11
Glyma.04G245000 hypothetical protein NA 1Chr04:51252430–51253384 (-)2.807e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.881e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.881e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.641e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.79e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.043e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.025e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.172e-12
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)9.411e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)9.411e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)9.411e-11
Glyma.16G003300 hypothetical protein AT5G49960:AT5G49960:ion channel protein 1Chr16:183599–192001 (+)8.688e-11
Glyma.16G003500 GLYI-22 putative lactoylglutathione lyase NA 1Chr16:194687–196274 (-)5.222e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)9.185e-11