Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39340

Metabolite ID
P39340
Deionized mass
552.0664 Da
Average m/z
553.0742
Average RT
19.4906
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)4.477e-11
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)8.178e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.75e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)6.868e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)1.815e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.24e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.014e-15
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.097e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.138e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.995e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.328e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.328e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.275e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.659e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.659e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.659e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.659e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)8.183e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.57e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.57e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.303e-13
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)6.691e-14
Glyma.09G167000 hypothetical protein NA 1Chr09:39103764–39109664 (-)8.174e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.351e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.351e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)8.872e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.351e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.351e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)5.249e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)5.249e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)5.249e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.769e-12
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)9.254e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.848e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.848e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.532e-11
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.088e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.91e-12
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)7.907e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)7.9e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.976e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.168e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.235e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.31e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.31e-13
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)3.574e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)2.881e-11
Glyma.19G147000 hypothetical protein NA 1Chr19:40784257–40785271 (-)4.196e-11
Glyma.19G147100 hypothetical protein NA 1Chr19:40799107–40802473 (+)4.196e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.295e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.815e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)6.423e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.882e-16