Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39095

Metabolite ID
P39095
Deionized mass
508.2306 Da
Average m/z
509.2367
Average RT
19.3715
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.187e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.284e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.027e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.027e-13
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)2.392e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.683e-13
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.952e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)1.327e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)1.327e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)2.432e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.535e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.55e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.426e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.187e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.187e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.187e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.187e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)7.547e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.829e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.829e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)2.232e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.275e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.275e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.658e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.658e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.658e-12
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)8.447e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)7.477e-14
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)4.827e-13
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)4.827e-13
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)5.806e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.284e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)8.71e-11
Glyma.15G107100 hypothetical protein NA 1Chr15:8394915–8402251 (-)1.545e-11
Glyma.15G107500 hypothetical protein NA 1Chr15:8435042–8443925 (+)6.628e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)1.575e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.394e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.856e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.051e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.879e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.422e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.189e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.189e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.836e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.918e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.37e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.236e-15