Overview Annotation GWAS Evidence Associated genes

P39048

Metabolite ID
P39048
Deionized mass
834.4221 Da
Average m/z
835.4294
Average RT
19.3399
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
14
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

14 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.283e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)9.6e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.188e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.116e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.773e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.773e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.773e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.262e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.262e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.18e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.18e-11
Glyma.13G002100 hypothetical protein AT1G64630:WNK10:with no lysine (K) kinase 10 1Chr13:612162–615666 (-)4.272e-12
Glyma.13G008500 hypothetical protein NA 1Chr13:2437672–2454019 (+)4.795e-12
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)1.682e-11