Overview Annotation GWAS Evidence Associated genes

P39016

Metabolite ID
P39016
Deionized mass
268.0763 Da
Average m/z
269.0813
Average RT
19.3245
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
8
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

8 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.177e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.177e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.274e-11
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)3.001e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.243e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.871e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.622e-13
Glyma.18G273500 hypothetical protein AT5G15800:SEP1:K-box region and MADS-box transcription factor family protein 1Chr18:55619766–55625860 (+)1.321e-11