Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38864

Metabolite ID
P38864
Deionized mass
684.2955 Da
Average m/z
685.3045
Average RT
19.2313
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)3.87e-17
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)6.876e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.598e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.952e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.952e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)8.456e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.104e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)1.064e-12
Glyma.05G233500 hypothetical protein NA 1Chr05:41066769–41067350 (-)1.877e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.497e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.601e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.595e-12
Glyma.08G061000 hypothetical protein AT1G11340:AT1G11340:G-type lectin S-receptor-like Serine/Threonine-kinase 1Chr08:4694260–4698526 (-)4.802e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.476e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.476e-11
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)7.197e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)8.256e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)8.256e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)8.256e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.828e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.828e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.624e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.624e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.87e-17
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.918e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.668e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.668e-14
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)4.473e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.707e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.598e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)4.551e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.262e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.488e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)6.659e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.427e-12
Glyma.16G139400 hypothetical protein AT3G50870:MNP:GATA type zinc finger transcription factor family protein 1Chr16:29672011–29674023 (+)5.593e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.686e-11
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)7.458e-11
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)7.458e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.345e-11