Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38740

Metabolite ID
P38740
Deionized mass
260.1737 Da
Average m/z
261.1819
Average RT
19.1750
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
129
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

129 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)1.233e-11
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.635e-11
Glyma.14G149300 hypothetical protein NA 3Chr14:32235308–32258014 (+)6.276e-18
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)5.446e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)9.289e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.428e-14
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)9.824e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.635e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)7.345e-11
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)1.861e-11
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)7.693e-13
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)7.693e-13
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)7.693e-13
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)2.452e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.894e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)6.8e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.742e-13
Glyma.02G116600 hypothetical protein AT1G13770:RUS3:root UVB sensitive protein (Protein of unknown function, DUF647) 1Chr02:11357006–11362220 (-)1.447e-11
Glyma.02G116700 hypothetical protein AT1G68980:AT1G68980:Tetratricopeptide repeat (TPR)-like superfamily protein__AT1G69290:AT1G69290:Pentatricopeptide repe… 1Chr02:11375844–11381371 (+)1.447e-11
Glyma.02G116800 hypothetical protein NA 1Chr02:11389946–11393074 (+)1.447e-11
Glyma.02G117100 hypothetical protein AT2G03620:MGT3:magnesium transporter 3 1Chr02:11400594–11409016 (-)1.447e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.371e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)6.58e-11
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)7.579e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.987e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.182e-11
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)1.373e-13
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)2.655e-12
Glyma.04G188900 hypothetical protein NA 1Chr04:45982982–45986148 (+)3.775e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.032e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.419e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.419e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.717e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.685e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.685e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.685e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)7.283e-11
Glyma.05G166400 hypothetical protein NA 1Chr05:35692494–35699192 (+)9.393e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.781e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.264e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.093e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)1.469e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)1.469e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)6.881e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)4.955e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)1.792e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.35e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)8.874e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)3.571e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.894e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)3.979e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.369e-11
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)2.598e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)8.683e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.043e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.043e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.043e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.043e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.621e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.296e-13
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)7.741e-12
Glyma.11G026700 hypothetical protein AT1G63020:NRPD1A:nuclear RNA polymerase D1A 1Chr11:1908384–1922893 (+)5.132e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.228e-13
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)3.827e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.332e-15
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.807e-15
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.808e-15
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.808e-15
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.807e-15
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.963e-11
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)2.304e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.764e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.764e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.764e-12
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)7.165e-13
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)9.342e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)2.199e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)7.226e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)6.416e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)6.415e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.416e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.812e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)5.586e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)3.036e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)3.036e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.643e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.276e-18
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)3.922e-12
Glyma.14G176600 hypothetical protein NA 1Chr14:43565478–43570243 (+)7.27e-11
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)4.773e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.428e-14
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)4.065e-13
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)7.19e-12
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)7.19e-12
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)2.435e-13
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)4.172e-12
Glyma.15G108100 hypothetical protein NA 1Chr15:8500878–8505582 (-)2.342e-11
Glyma.15G110200 hypothetical protein NA 1Chr15:8634006–8639001 (-)9.613e-12
Glyma.15G111200 hypothetical protein AT1G11950:AT1G11950:Transcription factor jumonji (jmjC) domain-containing protein 1Chr15:8705907–8710609 (-)1.067e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.874e-18
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)6.563e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)7.973e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)5.006e-15
Glyma.16G062500 hypothetical protein NA 1Chr16:6099546–6105267 (-)7.17e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.322e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.51e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.272e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.264e-11
Glyma.16G219000 hypothetical protein NA 1Chr16:37634112–37638596 (-)9.947e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)1.009e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)7.286e-12
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)2.958e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.639e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.639e-14
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.628e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.446e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.042e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.88e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.159e-12
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)1.233e-11
Glyma.20G105000 F-box/LRR-repeat protein 10 AT2G17020:AT2G17020:F-box/RNI-like superfamily protein 1Chr20:34726756–34729686 (+)5.222e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)6.271e-12
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)1.698e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.862e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.218e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)5.371e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.154e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.865e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.479e-13