Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38636

Metabolite ID
P38636
Deionized mass
90.0465 Da
Average m/z
91.0536
Average RT
19.1110
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
127
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

127 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)1.964e-15
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)5.377e-12
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)2.576e-13
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)6.693e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.183e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.857e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.217e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.468e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.311e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)6.319e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.214e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)6.517e-17
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.22e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.22e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)4.593e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.171e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.183e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.142e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)3.819e-11
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)5.52e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.53e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)1.796e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.202e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.952e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)6.421e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.595e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)2.244e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)7.231e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.325e-15
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.22e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.155e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.21e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.06e-13
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.369e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.369e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.369e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)4.425e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.528e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.528e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.528e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)6.919e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.901e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.605e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.605e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.929e-15
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)7.243e-14
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)2.922e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.534e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.214e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.214e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.214e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.214e-11
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)8.5e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.02e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.792e-11
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)6.963e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)6.172e-14
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)4.115e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)3.898e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)9.049e-15
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)5.329e-15
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)5.567e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)6.164e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.531e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.057e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.305e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.305e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.305e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.305e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.943e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.16e-15
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.537e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)7.304e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)7.304e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)7.304e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)7.304e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.566e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.566e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.566e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.621e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.621e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.676e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.676e-15
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.9e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.9e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.9e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.857e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.798e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.384e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.384e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.22e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)7.84e-18
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.945e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.343e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.927e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.995e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.946e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.995e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.995e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.425e-17
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.348e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)2.917e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)3.955e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.174e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.217e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.217e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.697e-15
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.207e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.087e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.132e-15
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.272e-14
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)5.012e-13
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.073e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.226e-13
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.468e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.197e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.197e-14
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)1.745e-11
Glyma.17G215200 hypothetical protein NA 1Chr17:36125880–36142936 (+)3.055e-13
Glyma.17G215400 hypothetical protein NA 1Chr17:36163614–36164915 (+)1.294e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.739e-18
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.311e-11
Glyma.18G212700 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr18:49942123–49944169 (-)6.42e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.779e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.779e-12
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)2.81e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)1.808e-11