Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38430

Metabolite ID
P38430
Deionized mass
600.1465 Da
Average m/z
601.1541
Average RT
19.0220
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
92
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

92 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.34e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)4.147e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)8.846e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.349e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.349e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)4.656e-14
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)4.656e-14
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)4.656e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)9.895e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)6.592e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.509e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.509e-16
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)3.933e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.496e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.34e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.554e-11
Glyma.02G031400 hypothetical protein NA 1Chr02:2899554–2901708 (+)7.541e-13
Glyma.02G033500 hypothetical protein AT1G60140:TPS10:trehalose phosphate synthase__AT1G70290:TPS8:trehalose-6-phosphatase synthase S8__AT1G23870:TPS9:trehal… 1Chr02:3098851–3104217 (-)1.817e-11
Glyma.02G033600 hypothetical protein AT1G70300:KUP6:K+ uptake permease 6 1Chr02:3112951–3120731 (-)2.912e-11
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)7.711e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)4.021e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.763e-14
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)1.494e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)3.35e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.062e-12
Glyma.05G131100 hypothetical protein AT5G60620:GPAT9:glycerol-3-phosphate acyltransferase 9 1Chr05:32411641–32419257 (+)6.623e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)6.623e-12
Glyma.05G131500 hypothetical protein AT5G44800:CHR4:chromatin remodeling 4 1Chr05:32446303–32473428 (+)6.036e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.562e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.229e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.388e-13
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.246e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)8.77e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.061e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.349e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.349e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.349e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.478e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.06e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)4.656e-14
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)4.656e-14
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)4.656e-14
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)3.633e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)4.656e-14
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)4.656e-14
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)7.267e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.371e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.371e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.371e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.371e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.395e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.29e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)8.633e-11
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 1Chr11:4720040–4726569 (+)8.661e-11
Glyma.11G065000 hypothetical protein AT4G36730:GBF1:G-box binding factor 1 1Chr11:4916855–4922192 (+)7.034e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.484e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.484e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.453e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.358e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.103e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.103e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.592e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.694e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.694e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.509e-16
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.065e-11
Glyma.13G353500 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit__AT1G51980:AT1G51980:Insulinase (Peptidase family M… 1Chr13:44204963–44209251 (+)1.382e-12
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)1.998e-13
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.653e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.094e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.615e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.094e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.094e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)7.078e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)7.078e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)4.943e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)4.147e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)4.147e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.147e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)4.147e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.535e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.498e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.018e-13
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)3.315e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)3.677e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)5.282e-13
Glyma.16G164800 hypothetical protein NA 1Chr16:32377776–32380635 (-)4.617e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.483e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.456e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.456e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.829e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.708e-13