Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38416

Metabolite ID
P38416
Deionized mass
128.0469 Da
Average m/z
129.0538
Average RT
19.0137
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)1.987e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)2.94e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.828e-11
Glyma.15G152400 hypothetical protein NA 2Chr15:12641790–12646649 (+)4.278e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)4.846e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.082e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.082e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.197e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)7.351e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.386e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)6.79e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.008e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.151e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.116e-16
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.771e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.371e-12
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)1.793e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)1.954e-13
Glyma.09G252400 hypothetical protein NA 1Chr09:47260143–47260334 (+)1.954e-13
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)6.346e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.361e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.234e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.873e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.873e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.06e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.19e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.758e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.758e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.758e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.541e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.898e-13
Glyma.15G152200 hypothetical protein NA 1Chr15:12632591–12637748 (+)7.067e-11
Glyma.15G152800 hypothetical protein NA 1Chr15:12669438–12671888 (+)7.067e-11
Glyma.15G153000 hypothetical protein AT3G21390:AT3G21390:Mitochondrial substrate carrier family protein 1Chr15:12705379–12709948 (+)2.381e-11
Glyma.15G153400 hypothetical protein NA 1Chr15:12730592–12733439 (+)6.693e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)6.909e-11
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)5.412e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)2.532e-13
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)2.895e-11
Glyma.17G145500 hypothetical protein AT4G17510:UCH3:ubiquitin C-terminal hydrolase 3 1Chr17:11947484–11955499 (-)6.362e-13
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)4.846e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)6.454e-14
Glyma.18G265500 hypothetical protein AT5G39250:AT5G39250:F-box family protein 1Chr18:55019514–55022070 (-)5.272e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)1.828e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.847e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.44e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.876e-11