Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38406

Metabolite ID
P38406
Deionized mass
579.2456 Da
Average m/z
580.2494
Average RT
19.0090
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
99
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

99 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.041e-16
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)5.798e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 2Chr03:2240686–2246512 (-)2.592e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)6.699e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.16e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)1.968e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)3.3e-15
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.041e-16
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)1.933e-13
Glyma.01G047100 hypothetical protein AT1G14250:AT1G14250:GDA1/CD39 nucleoside phosphatase family protein__AT1G14230:AT1G14230:GDA1/CD39 nucleoside phosphata… 1Chr01:5503526–5511806 (+)1.87e-12
Glyma.01G047300 hypothetical protein AT1G27090:AT1G27090:glycine-rich protein 1Chr01:5514127–5517339 (+)1.95e-11
Glyma.01G047500 hypothetical protein NA 1Chr01:5528742–5532260 (-)1.95e-11
Glyma.01G047600 hypothetical protein NA 1Chr01:5545562–5545978 (+)4.948e-12
Glyma.01G096700 hypothetical protein NA 1Chr01:31374967–31380201 (+)3.157e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.989e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.138e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)7.873e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.339e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.339e-12
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)3.701e-13
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.63e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.243e-14
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)3.192e-12
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)8.269e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.116e-16
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)2.453e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.656e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)9.88e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.156e-11
Glyma.05G217100 hypothetical protein AT1G64440:RHD1:NAD(P)-binding Rossmann-fold superfamily protein 1Chr05:39735139–39739763 (+)4.612e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.282e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.163e-15
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.244e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.893e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.893e-11
Glyma.07G087500 hypothetical protein AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr07:8093667–8100429 (+)5.864e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)2.306e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.195e-14
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.535e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.16e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.16e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.16e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.16e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.19e-11
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)3.643e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)2.007e-12
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)2.213e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)4.42e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)1.234e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)4.196e-11
Glyma.09G252400 hypothetical protein NA 1Chr09:47260143–47260334 (+)4.196e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.517e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.419e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.331e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.331e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.331e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.331e-12
Glyma.11G094800 hypothetical protein NA 1Chr11:7199274–7201137 (+)1.896e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)8.833e-12
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)1.428e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.891e-11
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)3.607e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.384e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.384e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.518e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.212e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.212e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.493e-14
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)7.164e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.528e-11
Glyma.14G135100 hypothetical protein AT4G31540:EXO70G1:exocyst subunit exo70 family protein G1 1Chr14:23623422–23626499 (-)1.838e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.311e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.771e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.311e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.311e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.908e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.885e-17
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)7.526e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)7.526e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)2.615e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)8.578e-12
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)8.374e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)7.375e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)8.589e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.558e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)6.386e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)8.206e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.154e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.154e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)7.813e-12
Glyma.17G144000 hypothetical protein AT4G16760:ACX1:acyl-CoA oxidase 1 1Chr17:11759547–11765498 (-)1.697e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.614e-11
Glyma.18G045000 hypothetical protein AT5G45130:RHA1:Ras small GTP-binding family protein 1Chr18:3889384–3895138 (-)8.54e-11
Glyma.18G049200 hypothetical protein AT3G54210:AT3G54210:Ribosomal protein L17 family protein 1Chr18:4232694–4235086 (+)4.685e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)2.87e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)1.949e-13
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)4.763e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.293e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.826e-11