Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38381

Metabolite ID
P38381
Deionized mass
617.3945 Da
Average m/z
618.4013
Average RT
18.9987
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)4.422e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.266e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)3.256e-11
Glyma.06G305300 hypothetical protein NA 2Chr06:49431590–49435985 (-)5.266e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.851e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.573e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.724e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)1.061e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)8.321e-14
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)5.891e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)7.647e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)6.098e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.444e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.133e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)8.406e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.145e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.368e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.945e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.945e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.945e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.238e-15
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)5.895e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.266e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.621e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.099e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)6.805e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.851e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.573e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.573e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.573e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.573e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.633e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.82e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.913e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.913e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.901e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.901e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)4.581e-12
Glyma.13G182200 hypothetical protein AT3G45100:SETH2:UDP-Glycosyltransferase superfamily protein 1Chr13:29529252–29533936 (+)3.364e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.213e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.315e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)8.102e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.102e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.114e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.168e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)5.168e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.865e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.498e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.498e-16
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.308e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.65e-11