Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P37890

Metabolite ID
P37890
Deionized mass
839.3679 Da
Average m/z
840.3764
Average RT
18.8218
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
99
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

99 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)5.366e-15
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.299e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)4.789e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)6.05e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.428e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)8.012e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)5.095e-16
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)8.002e-13
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)4.387e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.024e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.287e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.634e-13
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)4.245e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)4.245e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)4.245e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)4.245e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)4.245e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)4.245e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)4.245e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)6.05e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)9.085e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.425e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.425e-12
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)1.269e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)1.269e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.59e-14
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.593e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)1.425e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.564e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.902e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)3.115e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)5.509e-12
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)7.512e-11
Glyma.04G245000 hypothetical protein NA 1Chr04:51252430–51253384 (-)5.555e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.34e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.651e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.587e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.587e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.299e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.299e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.856e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.553e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.823e-13
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.6e-12
Glyma.06G324300 GmCSyGT1 NA 1Chr06:51189321–51193954 (-)9.432e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.687e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.824e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.097e-12
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)4.808e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.401e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.401e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)7.949e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.61e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.61e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.61e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.61e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.291e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.291e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.291e-12
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.872e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.372e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.372e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.687e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.687e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.687e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.514e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.688e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.511e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.9e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)5.794e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.321e-14
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)8.968e-13
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)9.999e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)4.525e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)6.832e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.346e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.722e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)4.098e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.004e-11
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.745e-11
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 1Chr16:30604586–30608656 (+)8.413e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.004e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)9.057e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)5.585e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)9.111e-11
Glyma.18G044100 hypothetical protein NA 1Chr18:3809348–3812858 (-)2.952e-11
Glyma.18G044200 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 1Chr18:3813589–3817289 (-)2.952e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)9.761e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.475e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)5.095e-16
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.376e-17
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.376e-17
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.613e-11
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)5.111e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)8.619e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.063e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)6.415e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.511e-12