Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P37649

Metabolite ID
P37649
Deionized mass
308.0890 Da
Average m/z
617.1847
Average RT
18.7254
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
77
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

77 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.269e-16
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.16e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)7.312e-12
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)6.54e-11
Glyma.13G201600 hypothetical protein NA 2Chr13:31521512–31522992 (+)3.288e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.537e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.395e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.487e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.841e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.265e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.269e-16
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.142e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.761e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.761e-14
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)3.702e-12
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)1.003e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)1.003e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)1.003e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.163e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.478e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)1.771e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)3.276e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.724e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.819e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.036e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)1.005e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.179e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.226e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.388e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.208e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.208e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.973e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.939e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.939e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.939e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.695e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.717e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.943e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.537e-14
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.09e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.09e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.582e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.437e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.479e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)5.178e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)5.179e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.965e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.966e-12
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)6.849e-12
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)2.257e-11
Glyma.13G201300 hypothetical protein NA 1Chr13:31497499–31499001 (+)5.647e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)1.35e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.683e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.395e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.503e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.585e-12
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)2.442e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.041e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)9.045e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)7.799e-13
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)5.569e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.16e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.16e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.16e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.16e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.07e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.947e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.871e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.085e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.503e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.503e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.841e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.531e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.028e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.435e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.435e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.355e-11