Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P36989

Metabolite ID
P36989
Deionized mass
498.0520 Da
Average m/z
499.0593
Average RT
18.4003
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.14G171400 hypothetical protein NA 3Chr14:42398866–42404627 (+)3.824e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)5.478e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.593e-11
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 3Chr18:12220182–12260477 (+)1.309e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.162e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.125e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.242e-15
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)5.578e-11
Glyma.01G010200 hypothetical protein AT1G32060:PRK:phosphoribulokinase 1Chr01:993024–997480 (-)4.022e-12
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)1.724e-12
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)3.412e-11
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)3.412e-11
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)3.412e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.391e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.391e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.706e-11
Glyma.03G034200 hypothetical protein NA 1Chr03:3989072–3993561 (+)7.325e-11
Glyma.03G036500 WNK5 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr03:4402746–4408323 (+)5.555e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.975e-12
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)1.843e-12
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)1.843e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.877e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.728e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.728e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.728e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)8.566e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)3.52e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.69e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.487e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.162e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.162e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.162e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.162e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)4.501e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)8.566e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.089e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.644e-12
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)5.633e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.99e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.135e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.242e-15
Glyma.14G149700 hypothetical protein AT1G77590:LACS9:long chain acyl-CoA synthetase 9 1Chr14:32271989–32301104 (+)1.326e-12
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)8.862e-12
Glyma.14G150300 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr14:32471354–32474446 (-)2.001e-12
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)3.824e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.638e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.796e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.593e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.593e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.392e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.025e-13
Glyma.16G166900 hypothetical protein NA 1Chr16:32619260–32629262 (-)9.334e-12
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)1.286e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.37e-13
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)9.103e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.354e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.039e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.039e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.275e-13