Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P36954

Metabolite ID
P36954
Deionized mass
505.2156 Da
Average m/z
506.2232
Average RT
18.3855
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.107e-11
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.321e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)6.851e-14
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)4.868e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.196e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.196e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 2Chr14:6037810–6041899 (+)3.961e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)3.275e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.496e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.321e-13
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)4.868e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.825e-12
Glyma.02G176800 hypothetical protein AT5G06839:TGA10:bZIP transcription factor family protein 1Chr02:29019977–29028838 (-)6.021e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.464e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.461e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.007e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.36e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.36e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.474e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)7.115e-13
Glyma.06G324300 GmCSyGT1 NA 1Chr06:51189321–51193954 (-)8.095e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)6.354e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.872e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.204e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)1.204e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.763e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.763e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.851e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.228e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.766e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.766e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.196e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.613e-14
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.614e-14
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.614e-14
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.551e-15
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)1.143e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.629e-17
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.314e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)6.889e-11
Glyma.14G071900 hypothetical protein AT1G19650:AT1G19650:Sec14p-like phosphatidylinositol transfer family protein__AT1G75370:AT1G75370:Sec14p-like phosphati… 1Chr14:6043655–6049030 (+)3.96e-11
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)1.311e-11
Glyma.14G072600 hypothetical protein NA 1Chr14:6097297–6102480 (-)1.917e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.501e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.501e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.501e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.879e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.214e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)5.84e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.453e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.496e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)2.657e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.172e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.172e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.64e-11